RNA id: TU1788134


Basic Information

Item Value
RNA id TU1788134
length 1704
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1562853
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53881366 ~ 53883069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaggatGGTGGGGAGGGATAGCGGAGgatgggtgaggagggggagggatgtAGAGTGATTTGGGGGTGAGGTTTGTCTGAGTGGGGGGCTCTGGAGTGACCCCTGGGTGTAGGAAGCGGGGGGGAAGAGGGCTGGTAGGGCAGGTgatgggaggaggaaggggaggcagcACTATGGTGGTGGGTGGAAGGATAATGGAAGGCGCTATGATGGGGTGAGGAGGGGCAGGACTGGTAATGGTGTGAAGCATGATGAGGGGAGACAGGCATTCTCTGAGGAGAGGTAAAATGGAGGGAGCTGTAATGGGGGTAGGAGTGGCGATGGGGGGAGGTGTGAGATTGATGATGAGGAGTAACGTGATTCTGAGAGACCTGTGAGTCTTTAATGGGGTTAAAGTTcatgttagggttagagttattgCTATAGTTCCAGGAAGTCTTATTGGAGTTACTATTGGGCAGTATGTTAGGCTCAGAGTGGTTCCAAGCAGTAGCCATGCTGTGGTTGGTGTAGTTAGTGGTGGTAGGATTACTGGTAGTAGTAGAGGGACCAGTCCCCTTCTTGTAGAGGAAGACGTTGTAGTGCAGAGGGGGGCTGGCCTCGGGGCGGAGCTTAGCCTCTTTAGGGAGGAGCAACTGTAGACCAATGGTGACTCCATCCTGCTTTAGAAATATATAGGGTTGAGAGTCAGAGGAGGATAGACATTTATAGACTAGAGAAGATAGAAATAAGTTGGATAGACAGGGTAAgtgagaaagataaagagagtgaTGGTTgagatagagggaaggaatgGAGAAATGGAGAACAAGGGTTAAGAAAGAGAacaggtgtgcatgtgtgtgagagagggaggacagctcataataatggctggaacgagcAAATGGCATcacaccatgtgtttgatgtgtttgataccattacaTTGATTCCACTCTAGCCATTATCATCAGCCCGTCATCCCAAATGAggcgccaccaacctcctgtgagagtacgttctattggttgcaagaattttgtataatattttaaaataacaaaatgtaagTTTTGAATCTGGCGTCGTTTTGCGTATCAGTTCAATCTTATTtcaaaatatattgtttttttaaaaatctattagtatatttgagtttaaccacattatttgttctgtttttgattttctggtggattaaactgaaatttaaccaactttctatggcttgtttaaaaaattacGATATTTGGGAGATGATTTCCTTTTTaaataactgaaagtgagaggttgtaatctgaataaaggggaaaaggccattcttgaacatggggtgagacattttATTAATTTGCTAGAGAAcaagtttggatttaagtataacttttgtatgattgacacctttagtgagaggtctaatgctttaatatttaatcatttctgccctccgagttcatattcattatataaataggcccgtttaattttgtctggtttgccgttccaaataaaatggaatataagaccataagcaaataggtaaacagggatatgactaaagaattaatcagggtgatttttccacaaatagacaggtattttcctttccatggtagcatgatccatttttgctaactttctgtAAAAATGTATTGGTGTGAGATCATTTCTTTATTTCGGGAaatgtataccgagtatgtccacatcaccgtcagaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788128 lncRNA downstream 183 53880861 ~ 53881183 (-) True G1562852
TU1788104 lncRNA downstream 10716 53842606 ~ 53870650 (-) True G1562829
TU1788101 lncRNA downstream 14969 53822929 ~ 53866397 (-) True G1562826
TU1788112 lncRNA downstream 37282 53835467 ~ 53844084 (-) True G1562837
TU1788102 lncRNA downstream 38449 53831952 ~ 53842917 (-) True G1562827
TU1788135 lncRNA upstream 8 53883077 ~ 53884156 (-) True G1562854
TU1788138 lncRNA upstream 12905 53895974 ~ 53896404 (-) True G1562857
TU1788137 lncRNA upstream 13711 53896780 ~ 53898361 (-) True G1562856
TU1788140 lncRNA upstream 22193 53905262 ~ 53905562 (-) True G1562859
TU1788141 lncRNA upstream 24998 53908067 ~ 53908275 (-) True G1562860
XR_005037512.1 mRNA downstream 134359 53744387 ~ 53747007 (-) False LOC118941188
XR_002469564.2 mRNA downstream 140314 53738342 ~ 53741052 (-) False LOC110496535
XR_002469563.2 mRNA downstream 175733 53703762 ~ 53705633 (-) False LOC110496534
XM_021572482.2 mRNA downstream 210864 53663547 ~ 53670502 (-) True aste1b
XM_021572483.2 mRNA downstream 210906 53663547 ~ 53670460 (-) False aste1b
XM_036953264.1 mRNA upstream 4068 53887137 ~ 53894981 (-) False mrpl3
XM_036953263.1 mRNA upstream 4068 53887137 ~ 53895002 (-) False mrpl3
XM_036953265.1 mRNA upstream 19179 53902248 ~ 53915395 (-) True cpne4b
XM_021572498.2 mRNA upstream 165795 54048864 ~ 54085680 (-) False atxn1a
XM_036953268.1 mRNA upstream 165795 54048864 ~ 54206719 (-) False atxn1a
TU1788103 other downstream 5774 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 128683 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 252944 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 278672 53598650 ~ 53602694 (-) True G1562762
TU1786175 other downstream 1233589 52644989 ~ 52647777 (-) True G1561279
TU1788095 other upstream 6640 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 755798 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 777557 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 2598399 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2845283 56728352 ~ 56737347 (-) True LOC110496560

Expression Profile