RNA id: TU1786934


Basic Information

Item Value
RNA id TU1786934
length 478
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1561864
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53912243 ~ 53912720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACGTGTATTTACCTGTCCTCACGGGCATTTACCTGTCCTCACGTGTATTCACATGTCCTCACGTGCATTCACTTGTCCTCACGTGCACTCACCTATCCTCACATTCACTCACTTGTCCCAACGTGCACTCCATAGCTCCGAGGAAGTCTGTGTCTCTGAGTCCATTGTGAGCGGAGCTGATGTCATGTAGCTCATAGCGAAGACGCTGAACCTCCTCAAAGTAGAAGTCAACCAGAAACACCTTGGAAAACACTGGATTGATACTGCTACGGATCACCTCTGTCCGgtccacctgcacacacacacacacacgcccacacgcacacacgcaagtacacacacacacacactcacgcacacacacacacaaaggcacacacacacgcaggcatgcacgcacacacgcatacacacaaacacactttcaaGTTGTCACACAAGTACAATATCCAATGGTGATTATTGTAAACAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786908 lncRNA upstream 17295 53887139 ~ 53894948 (+) True G1561843
TU1786923 lncRNA upstream 43837 53855267 ~ 53868406 (+) True G1561853
TU1786919 lncRNA upstream 115400 53789231 ~ 53796843 (+) True G1561849
TU1786925 lncRNA upstream 118386 53772491 ~ 53793857 (+) True G1561855
TU1786961 lncRNA downstream 2428 53915148 ~ 53915563 (+) True G1561891
TU1786900 lncRNA downstream 15000 53927720 ~ 53928180 (+) False dync1li1
TU1786905 lncRNA downstream 15000 53927720 ~ 53928304 (+) True dync1li1
TU1787032 lncRNA downstream 131352 54044072 ~ 54053417 (+) False G1561943
TU1787034 lncRNA downstream 131352 54044072 ~ 54050752 (+) True G1561943
XM_036953260.1 mRNA upstream 29751 53812083 ~ 53882492 (+) False LOC110519664
XM_036953259.1 mRNA upstream 31780 53812084 ~ 53880463 (+) False LOC110519664
XM_036953261.1 mRNA upstream 31780 53812085 ~ 53880463 (+) False LOC110519664
XM_036953262.1 mRNA upstream 31780 53812087 ~ 53880463 (+) True LOC110519664
XM_036951071.1 mRNA upstream 181827 53713836 ~ 53730416 (+) False LOC110514975
XM_021572496.2 mRNA downstream 3572 53916292 ~ 53928181 (+) False dync1li1
XM_021572497.2 mRNA downstream 3572 53916292 ~ 53928181 (+) False dync1li1
XM_036953266.1 mRNA downstream 70917 53983637 ~ 54008038 (+) True LOC110496857
XM_036953270.1 mRNA downstream 109562 54022282 ~ 54036714 (+) False gmpr
XM_036953271.1 mRNA downstream 109879 54022599 ~ 54036714 (+) True gmpr
TU1786926 other upstream 35313 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 71372 53817164 ~ 53840871 (+) False G1561845
TU1786915 other upstream 85994 53817164 ~ 53826249 (+) True G1561845
TU1786914 other upstream 89380 53817164 ~ 53822863 (+) False G1561845
TU1786837 other upstream 187579 53720318 ~ 53724664 (+) False LOC110514975
TU1787303 other downstream 597038 54509758 ~ 54510746 (+) True LOC110496545
TU1788910 other downstream 1225928 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1995530 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 2116218 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 2137868 56050588 ~ 56051793 (+) True G1564638

Expression Profile