RNA id: TU1787483


Basic Information

Item Value
RNA id TU1787483
length 378
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1562329
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54745750 ~ 54746189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaatccccaaatctagatgtgcaaagctgatacagacataacCAAGGCAtatcaaagctgatacagacataacCAAGGCATaccaaagctgatacagacataacCAAGGCAtatcaaagctgatacagacataacCAAGGCAtatcaaagctgatacagacataacCAAGGCATaccaaagctgatacagacataacCAAGGCATATCAAAGCTGTGATCGCTGCTAAatatgcttctacaaagtattgactcaggggtgtgattacttacagtatgtaaattagatatttatatatttaattttcaataaatgtgcaaacatttacaaaaacttgttttcactttgtcaatatggggtattgggtgtagatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787469 lncRNA upstream 11928 54733544 ~ 54733822 (+) True G1562315
TU1787395 lncRNA upstream 29632 54597397 ~ 54716118 (+) True G1562259
TU1787400 lncRNA upstream 92640 54639918 ~ 54653110 (+) True G1562262
TU1787394 lncRNA upstream 105972 54597397 ~ 54639778 (+) False G1562259
TU1787324 lncRNA upstream 193370 54529628 ~ 54552380 (+) True G1562197
TU1787504 lncRNA downstream 18059 54764248 ~ 54764638 (+) True G1562341
TU1787533 lncRNA downstream 59400 54805589 ~ 54807370 (+) True G1562366
TU1787547 lncRNA downstream 84162 54830351 ~ 54831448 (+) True G1562377
TU1787568 lncRNA downstream 116608 54862797 ~ 54863017 (+) True G1562398
TU1788726 lncRNA downstream 190635 54936824 ~ 54937486 (+) True G1563371
XM_021572516.2 mRNA upstream 57869 54657406 ~ 54687881 (+) True LOC110496550
XM_021572515.2 mRNA upstream 110493 54631385 ~ 54635257 (+) True LOC110496549
XM_036953293.1 mRNA upstream 169306 54554378 ~ 54576444 (+) True LOC110496548
XM_036953282.1 mRNA upstream 234827 54412770 ~ 54510923 (+) False LOC110496545
XM_036953281.1 mRNA upstream 335829 54322817 ~ 54409921 (+) True LOC110496546
XM_036953296.1 mRNA downstream 7566 54753755 ~ 54817359 (+) False LOC110496551
XM_036953297.1 mRNA downstream 7566 54753755 ~ 54817359 (+) True LOC110496551
XM_021572875.2 mRNA downstream 77471 54823660 ~ 54827619 (+) True armh2
NM_001165097.2 mRNA downstream 107717 54853906 ~ 54859078 (+) True tppc3
XM_036953301.1 mRNA downstream 305686 55051875 ~ 55171394 (+) False LOC110496553
TU1787303 other upstream 235004 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 868820 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 904879 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 392459 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1162061 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1282749 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1304399 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 2285432 57031621 ~ 57031963 (+) True G1565672

Expression Profile