RNA id: TU1788615


Basic Information

Item Value
RNA id TU1788615
length 2446
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1563272
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54814861 ~ 54817329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACTTTCATTGAGCAGGAGAAATACTGTAAACCAATAGGAGAAAATAATGTAATGCAGTCTACTGAAGCTATGTGACATGACCTTTCTGTGTGCTTTCTGTTCAAGTCCAAGGTTTACcataatgtaaagatataatgcAAATCATGTGTGGTTACATAAAATATGATGAATATTAAACAACGTTGAATTATTTGACCTACGTCTTTAATCTGATGACTTGGATTGGAATAGAAGCAAAATGTCAATTCACAACACTGGTCATTTTTAGTAGAAAGTAAGCAGAGGCCtcgtggagaaaaaaaaaacaaggatgTTGTTAGAGTTAGTCCTTGAAGTAACTAGTATCATCTTACTAAAATACTGTAATGTTATTCACATCATGGGAGAAACAGGCATTGTTACTCAAAATATAGACCATGTTCAACGAACACAAGGCCACACTTTGACATAGAACAACAAAAAGCCATCTTCAATTTGAAAAACTCACACTTAaaataacattatCACACATATTACTGCCTTAAATACACCTATTTCATCGCTATGGCTTTTGGAGAGTGTGCAATTAGTTAGAACCCGATGTAATGTCGCAGGATTGGGATGATCATTTAGATAACATTGATTAATATTGTTGTGCTTTTCAGGTGAGTCTGGGTGTAGAGGCCAGGTTGCAGATAGGTTCATGATTCATTCTTACAAAAGATGATTCTCTTAGATTCAGGCTTTACTTTGGTTATGAGTCACTTGCGTAATAAAGAAAGATTCTCTAATATCTACGGTCCCATTTGGACCAAAGCTATATGATATTGGCAAATCCTCTCCAGATAATAACCAGCCATTCATTCTACTTACAGGAAGAATCCACTCAAACAGCTTTTTGGTATTTCTTTTCATTAGTCTACTGTTGATACTGtcccaaaatatagtttttgagtggatttttcctttaaaACGCATAGACAAATTCCAAAAGAGCTAAACAAATCCACATTTTGAGTTACATTATATGTAAGCAAGATCATTCCCAAAATGAATTTGAGGCCAATATTTGAAATGTCAACCAGAAGCAGAAAATGAAACAATTTTACTAGTATCTGCATTCTGCCCTCTTACTCAAAAAAGTACATGCAAATGAAAGAATATTAGAATCCAAAATGTGACGtgtaaataagtaaataaattaGGTCGAGAAACAAACATGTTTTGTTGTCGTGGCAAAGAGGCCACGGACTCAGTAGTATAGTTACAATAGGCATAAGAAGCTATACGGAGTACTATAGCCTCGGCAACATCCCAACTTATACAAACCCCTTGGTTCTGATCTGTACCGCTATGGAGCAGTTACGTTCTCATTTCTCACTAACATTACCTCACTAACACATACTCCTAGACTGCATTAGTACCAATAGGATGAAAAGAGCAGTACATGTAGTAATGGGCACATGCATGGAGGCCAACCTGCTTCCAAAACAATAGATTCTGATCAATCTCCTCCAGTGGCTTAAACAACTGATCTCAAATCAGTTCCCAGCAAGCAGACATTCAATCAAACTCTGAATGCAGATCCCAGGCATGTGTGGGTAGAAGAGTTTGTTAAGCAGTCCAAGTATATGATTCTCTCCACGTTGTGCATGTTGATGAAGTGAGGACATTGCTGGCCGGTAAGACACCGTCTTCCTCTTTTTGCATGTTGATGACGTGAGATTGCGAACATTGCTTAACTACCTCCTCCTGAGCAACCTGAATCTGTCTTCTGACTTCTCATCCATGACACACTGACAGAAAGTGTTCAAACGGTCTGTAAAATCCCTGAAACTCAACGATGCATATCAGAAAAACACCAACTCGATCCATTTCGATGCGTCACTCATTATCACACAGAGTTTAATGCTGTGCTATGATATTTACATGCCTGCCACAGTGCAATTCAAAAGTACAAATAGCCGTCGACTAATGTGAACGTCACTtactaaaacaaataattaaTAGCAGTTATATAAAGCAACCATAACTGTGATACTGATAATAACAATGTCAAACACAACCGTGATAATAAGATTCATAATAATAGTTATGATAGTAAATAGGCTCTGTCTGTGCAGTGAGAGATTGCTTAATAGTGGTGGTCAGTGGACAGCTAGGATTTAGACCAGTCTGTTGAGAAGGATGAGACATGTGGCCCTTTGATGATGAGTTGGGCTCCTCTGCTTTGATCAGGCCCCTCCCCCTAGCTGTGTCCATTCAAATGTTCAGGCAAGGTGGAGGGAGGCCCGGACTGTTGGGGGTGAGGGGGTTGTCCCCCTCCTGTGGTTATGATGCTCCTAGGTTAAGTTAATTAGACCTGTGCTTTCAGAAGGCAGTGGTGACAGCGGTCCCTCGCCTTGTCCCCAGTTGTACCAGCTCCCTGGGCACCGTGTCCAGCTGCTCATACGCCAGACGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788627 lncRNA downstream 94352 54720215 ~ 54720509 (-) True G1563284
TU1788608 lncRNA downstream 127378 54684013 ~ 54687483 (-) False G1563266
TU1788609 lncRNA downstream 127378 54684013 ~ 54687483 (-) True G1563266
TU1788596 lncRNA downstream 148196 54665729 ~ 54666665 (-) True G1563255
TU1788572 lncRNA downstream 205161 54606755 ~ 54609700 (-) True G1563234
TU1788679 lncRNA upstream 55457 54872786 ~ 54873168 (-) True G1563328
TU1788724 lncRNA upstream 117361 54934690 ~ 54934917 (-) True G1563369
TU1788725 lncRNA upstream 117927 54935256 ~ 54935466 (-) True G1563370
TU1788727 lncRNA upstream 119730 54937059 ~ 54937506 (-) True G1563372
TU1788732 lncRNA upstream 125816 54943145 ~ 54943722 (-) True G1563377
XM_021572874.2 mRNA downstream 161929 54636849 ~ 54652932 (-) False LOC110496860
XM_036953288.1 mRNA downstream 262544 54525693 ~ 54552317 (-) False tpd52
XM_021572521.2 mRNA upstream 10388 54827717 ~ 54839922 (-) True LOC110496552
XM_036953300.1 mRNA upstream 25105 54842434 ~ 54853844 (-) True LOC118941190
XM_036953314.1 mRNA upstream 1887523 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 1911012 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 1911012 56728341 ~ 56737381 (-) False LOC110496560
TU1788592 other downstream 149218 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 162011 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 919912 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 939269 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 1062178 53752406 ~ 53752683 (-) True G1562816
TU1790620 other upstream 1664139 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 1911023 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3210182 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 3258294 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 3350055 58167384 ~ 58167697 (-) True G1566972

Expression Profile