RNA id: TU1787568


Basic Information

Item Value
RNA id TU1787568
length 221
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1562398
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54862797 ~ 54863017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaacctgatggagtctgcaaaagacctgagactgggatggagatttgtcttccaacaagacaatgatccaatacataaagcaaaatctacaatggaatggttaaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787547 lncRNA upstream 31349 54830351 ~ 54831448 (+) True G1562377
TU1787533 lncRNA upstream 55427 54805589 ~ 54807370 (+) True G1562366
TU1787504 lncRNA upstream 98159 54764248 ~ 54764638 (+) True G1562341
TU1787483 lncRNA upstream 116608 54745750 ~ 54746189 (+) True G1562329
TU1787469 lncRNA upstream 128975 54733544 ~ 54733822 (+) True G1562315
TU1788726 lncRNA downstream 73807 54936824 ~ 54937486 (+) True G1563371
TU1788835 lncRNA downstream 183388 55046405 ~ 55046605 (+) True G1563478
TU1788975 lncRNA downstream 422927 55285944 ~ 55287562 (+) True G1563607
TU1788990 lncRNA downstream 445408 55308425 ~ 55308791 (+) True G1563621
TU1789164 lncRNA downstream 450440 55313457 ~ 55313770 (+) True G1563773
NM_001165097.2 mRNA upstream 3719 54853906 ~ 54859078 (+) True tppc3
XM_021572875.2 mRNA upstream 35178 54823660 ~ 54827619 (+) True armh2
XM_036953298.1 mRNA upstream 45438 54738254 ~ 54817359 (+) False LOC110496551
XM_036953301.1 mRNA downstream 188858 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA downstream 233027 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA downstream 236130 55099147 ~ 55171394 (+) True LOC110496553
XM_036953304.1 mRNA downstream 310689 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA downstream 311096 55174113 ~ 55213167 (+) True LOC110496554
TU1787303 other upstream 352051 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 985867 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 1021926 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 275631 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1045233 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1165921 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1187571 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 2168604 57031621 ~ 57031963 (+) True G1565672

Expression Profile