RNA id: TU1788732


Basic Information

Item Value
RNA id TU1788732
length 578
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1563377
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54943145 ~ 54943722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttaaggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaatttgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatgggttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788727 lncRNA downstream 5639 54937059 ~ 54937506 (-) True G1563372
TU1788725 lncRNA downstream 7679 54935256 ~ 54935466 (-) True G1563370
TU1788724 lncRNA downstream 8228 54934690 ~ 54934917 (-) True G1563369
TU1788679 lncRNA downstream 69977 54872786 ~ 54873168 (-) True G1563328
TU1788615 lncRNA downstream 125816 54814861 ~ 54817329 (-) True G1563272
TU1789000 lncRNA upstream 117544 55061266 ~ 55064066 (-) False G1563630
TU1789004 lncRNA upstream 117544 55061266 ~ 55062907 (-) False G1563630
TU1789002 lncRNA upstream 118025 55061747 ~ 55062319 (-) True G1563630
TU1789090 lncRNA upstream 220671 55164393 ~ 55237210 (-) True G1563704
TU1789097 lncRNA upstream 237769 55181491 ~ 55198928 (-) True G1563710
XM_036953300.1 mRNA downstream 89301 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 103223 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 290213 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 390828 54525695 ~ 54552317 (-) True tpd52
XM_036953286.1 mRNA downstream 408882 54525695 ~ 54534263 (-) False tpd52
XM_036953314.1 mRNA upstream 1761130 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 1784619 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 1784619 56728341 ~ 56737381 (-) False LOC110496560
LOC110496863 mRNA upstream 2114815 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 2124118 57067840 ~ 57070602 (-) False LOC110496566
TU1788592 other downstream 277502 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 290295 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 1048196 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 1067553 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 1190462 53752406 ~ 53752683 (-) True G1562816
TU1790620 other upstream 1537746 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 1784630 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3083789 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 3131901 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 3223662 58167384 ~ 58167697 (-) True G1566972

Expression Profile