RNA id: TU1788835


Basic Information

Item Value
RNA id TU1788835
length 201
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1563478
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55046405 ~ 55046605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAAACCACccttctgaaacagagagaggagaaagaggctgatacagagagaagAAACGAGGGAGTGTGAAaaacagagaagagaaagagatggagatagCAGCAGTAAAGTCACGGTTTATAGAGAAGAAAATAGTAGAATTTCaacgagggaaagagagtgagcaATGGAGAAAGTTGTAAAGAGGGATAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788726 lncRNA upstream 108919 54936824 ~ 54937486 (+) True G1563371
TU1787568 lncRNA upstream 183388 54862797 ~ 54863017 (+) True G1562398
TU1787547 lncRNA upstream 214957 54830351 ~ 54831448 (+) True G1562377
TU1787533 lncRNA upstream 239035 54805589 ~ 54807370 (+) True G1562366
TU1787504 lncRNA upstream 281767 54764248 ~ 54764638 (+) True G1562341
TU1788975 lncRNA downstream 239339 55285944 ~ 55287562 (+) True G1563607
TU1788990 lncRNA downstream 261820 55308425 ~ 55308791 (+) True G1563621
TU1789164 lncRNA downstream 266852 55313457 ~ 55313770 (+) True G1563773
TU1789171 lncRNA downstream 271659 55318264 ~ 55318516 (+) True G1563780
TU1789189 lncRNA downstream 283028 55329633 ~ 55329929 (+) True G1563798
NM_001165097.2 mRNA upstream 187327 54853906 ~ 54859078 (+) True tppc3
XM_021572875.2 mRNA upstream 218786 54823660 ~ 54827619 (+) True armh2
XM_036953299.1 mRNA upstream 229046 54738254 ~ 54817359 (+) False LOC110496551
XM_036953301.1 mRNA downstream 5270 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA downstream 49439 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA downstream 52542 55099147 ~ 55171394 (+) True LOC110496553
XM_036953304.1 mRNA downstream 127101 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA downstream 127508 55174113 ~ 55213167 (+) True LOC110496554
TU1787303 other upstream 535659 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 1169475 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 1205534 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 92043 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 861645 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 982333 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1003983 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 1985016 57031621 ~ 57031963 (+) True G1565672

Expression Profile