RNA id: TU1789004


Basic Information

Item Value
RNA id TU1789004
length 254
lncRNA type intronic
GC content 0.31
exon number 3
gene id G1563630
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55061266 ~ 55064066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgatcactaaataaagagagagaggtcactaaataaagagagagaaATATCActaaataaagagaaagagagatcactaaataaagagagagagatcactaaataaagagagagagGTCATTAAATAAAGAGTGATAGATATCActaaataaagagaaagagagatcactaaataaagagagagagagatcactaaataaagagagagagagatcatcaaataaagagagagagagatcactaaataaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788732 lncRNA downstream 117544 54943145 ~ 54943722 (-) True G1563377
TU1788727 lncRNA downstream 123760 54937059 ~ 54937506 (-) True G1563372
TU1788725 lncRNA downstream 125800 54935256 ~ 54935466 (-) True G1563370
TU1788724 lncRNA downstream 126349 54934690 ~ 54934917 (-) True G1563369
TU1788679 lncRNA downstream 188098 54872786 ~ 54873168 (-) True G1563328
TU1789090 lncRNA upstream 101486 55164393 ~ 55237210 (-) True G1563704
TU1789097 lncRNA upstream 118584 55181491 ~ 55198928 (-) True G1563710
TU1789049 lncRNA upstream 129082 55191989 ~ 55213158 (-) False G1563671
TU1789050 lncRNA upstream 129082 55191989 ~ 55213158 (-) False G1563671
TU1789052 lncRNA upstream 129082 55191989 ~ 55213158 (-) False G1563671
XM_036953300.1 mRNA downstream 207422 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 221344 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 408334 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 508949 54525695 ~ 54552317 (-) True tpd52
XM_036953286.1 mRNA downstream 527003 54525695 ~ 54534263 (-) False tpd52
XM_036953314.1 mRNA upstream 1641945 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 1665434 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 1665434 56728341 ~ 56737381 (-) False LOC110496560
LOC110496863 mRNA upstream 1995630 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 2004933 57067840 ~ 57070602 (-) False LOC110496566
TU1788592 other downstream 395623 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 408416 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 1166317 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 1185674 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 1308583 53752406 ~ 53752683 (-) True G1562816
TU1790620 other upstream 1418561 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 1665445 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 2964604 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 3012716 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 3104477 58167384 ~ 58167697 (-) True G1566972

Expression Profile