RNA id: TU1789049


Basic Information

Item Value
RNA id TU1789049
length 605
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1563671
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55191989 ~ 55213158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtctttatttatCTTAAAACCAATAGGAATGTCTTCAAAATGGGTACAATGATAAAATAACTGACCATTTGCTTTCTTTTCCACCTACTTTCCTTCAGAGTAGGGATTAACAGTTGTAtcattgagagtgtgtgtgtgtgcatctgtgtgtgtgcttgaaacTGTGTGCGTGTGCAGTCATTGTAAGGAAGTCTTATTGTAAACCCAGTAAGCAGCATTGATGAATGGAAAAAAGTACCTACAGTAAGACTAGCCAAGTGTCTTCCTGTGAAactgtctctatgggtgtgtgtgtgtgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtcagacagtgTAGAAGAAAAAGAGCCTAATTACAAAAAGTGACTGACTGGTGAAATATTGGGACTGATCTTTATTTGCATGTTAGTCAGGGACAAAGCAGTGGGTGAATTGCGTGCTTGACAGACCGGTCCCATTAACAAGAAACGATCAGCTGTGGGACTGGATGTGTGCCAATGAAAGAGACTGCCTGCACAgcttaaagagagagaggaaagacctGCTACAATGGGACACTAATCAACTGACAAGGTCTCTTATGTATACTCTATGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1789000 lncRNA downstream 127923 55061266 ~ 55064066 (-) False G1563630
TU1789004 lncRNA downstream 129082 55061266 ~ 55062907 (-) False G1563630
TU1789002 lncRNA downstream 129670 55061747 ~ 55062319 (-) True G1563630
TU1788732 lncRNA downstream 248267 54943145 ~ 54943722 (-) True G1563377
TU1788727 lncRNA downstream 254483 54937059 ~ 54937506 (-) True G1563372
TU1789151 lncRNA upstream 75035 55288193 ~ 55289118 (-) True G1563761
TU1789168 lncRNA upstream 101647 55314805 ~ 55315301 (-) True G1563777
TU1789170 lncRNA upstream 104642 55317800 ~ 55318086 (-) True G1563779
TU1789371 lncRNA upstream 204555 55417713 ~ 55420680 (-) True G1563969
TU1789374 lncRNA upstream 211821 55424979 ~ 55433774 (-) True G1563971
XM_036953300.1 mRNA downstream 338145 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 352067 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 539057 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 639672 54525695 ~ 54552317 (-) True tpd52
XM_036953286.1 mRNA downstream 657726 54525695 ~ 54534263 (-) False tpd52
XM_036953314.1 mRNA upstream 1491694 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 1515183 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 1515183 56728341 ~ 56737381 (-) False LOC110496560
LOC110496863 mRNA upstream 1845379 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 1854682 57067840 ~ 57070602 (-) False LOC110496566
TU1788592 other downstream 526346 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 539139 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 1297040 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 1316397 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 1439306 53752406 ~ 53752683 (-) True G1562816
TU1790620 other upstream 1268310 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 1515194 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 2814353 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 2862465 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 2954226 58167384 ~ 58167697 (-) True G1566972

Expression Profile