RNA id: TU1788975


Basic Information

Item Value
RNA id TU1788975
length 499
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1563607
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55285944 ~ 55287562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatacagtatagtggaaatcaaagccaggacacacgtatagatacagtatagaggaaatcaaagccaggacacacgtatagatacagtatagaggaaatcaaagccaggacacacgtacagatacagtatagtggaaatcaaagcctggacacacgtatagatacagtatagtggaaatcaaagccaggacacacgtatagatacagtatagtggaaatcaaagcctggacacacgtatagatacagtatagaggaaatcaaagcctggacacacgtatagatacagtatagaggaaatcaaagccaggacacacgtatagatacagtatagaggaaatcaaagcctggacacacgtatagatacagtatagaggaaatcaaagcctggacacacgtatagatacagtatagaggaaatcaaagccaggacacacgtatagatacagtatagtggaaatcaaagccaggacacacgtatagatacagtatagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788835 lncRNA upstream 239339 55046405 ~ 55046605 (+) True G1563478
TU1788726 lncRNA upstream 348458 54936824 ~ 54937486 (+) True G1563371
TU1787568 lncRNA upstream 422927 54862797 ~ 54863017 (+) True G1562398
TU1787547 lncRNA upstream 454496 54830351 ~ 54831448 (+) True G1562377
TU1787533 lncRNA upstream 478574 54805589 ~ 54807370 (+) True G1562366
TU1788990 lncRNA downstream 20863 55308425 ~ 55308791 (+) True G1563621
TU1789164 lncRNA downstream 25895 55313457 ~ 55313770 (+) True G1563773
TU1789171 lncRNA downstream 30702 55318264 ~ 55318516 (+) True G1563780
TU1789189 lncRNA downstream 42071 55329633 ~ 55329929 (+) True G1563798
TU1789191 lncRNA downstream 42751 55330313 ~ 55330620 (+) True G1563800
XM_036953304.1 mRNA upstream 72777 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 72777 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 114550 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA upstream 114550 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA upstream 114550 55099147 ~ 55171394 (+) True LOC110496553
XM_036953306.1 mRNA downstream 741308 56028870 ~ 56501591 (+) False LOC110496862
XM_036953310.1 mRNA downstream 1281798 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 1281825 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 1281825 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 1281825 56569387 ~ 56704104 (+) False LOC110496558
TU1788910 other upstream 146713 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 775198 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 1409014 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 1445073 53817164 ~ 53840871 (+) False G1561845
TU1789919 other downstream 620688 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 741376 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 763026 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 1744059 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 1821566 57109128 ~ 57111840 (+) False LOC110496571

Expression Profile