RNA id: TU1789953


Basic Information

Item Value
RNA id TU1789953
length 371
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1564492
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55948743 ~ 55950874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggttgcactgtttgtttgtgggtgattgtctatgttgatggcttgtttcagcgcagctcgcattagcttcacggttgttattttgtttactgtttttgtatagtgtttcagcgcagctcgcattagcttcacggttgttattttgtttactgtttttgtatagtgtttcagtgttcagttctttCTTTAATTAAACATTCAACATGAACACATatcacgccgcattttggtcctccgatccttctcgcctctcctcttcagatgaagaggaggacgaccgtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1789924 lncRNA upstream 38637 55909557 ~ 55910106 (+) True G1564471
TU1789922 lncRNA upstream 40095 55908085 ~ 55908648 (+) False G1564470
TU1789920 lncRNA upstream 40095 55908250 ~ 55908648 (+) False G1564470
TU1789921 lncRNA upstream 40095 55908346 ~ 55908648 (+) True G1564470
TU1789917 lncRNA upstream 41947 55906567 ~ 55906796 (+) True G1564468
TU1790125 lncRNA downstream 105532 56056406 ~ 56146707 (+) True G1564643
TU1790196 lncRNA downstream 222130 56173004 ~ 56173206 (+) True G1564711
TU1790205 lncRNA downstream 233387 56184261 ~ 56184491 (+) True G1564720
TU1790211 lncRNA downstream 238834 56189708 ~ 56190328 (+) True G1564726
TU1790322 lncRNA downstream 410107 56360981 ~ 56361211 (+) True G1564832
XM_036953304.1 mRNA upstream 735576 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 735576 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 777349 55051875 ~ 55171394 (+) False LOC110496553
XM_036953306.1 mRNA downstream 77996 56028870 ~ 56501591 (+) False LOC110496862
XM_036953310.1 mRNA downstream 618486 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 618513 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 618513 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 618513 56569387 ~ 56704104 (+) False LOC110496558
TU1789919 other upstream 39809 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 809512 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1437997 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 2071813 53872173 ~ 53876930 (+) True G1561856
TU1786915 other upstream 2122494 53817164 ~ 53826249 (+) True G1561845
TU1790095 other downstream 78064 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 99714 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 1080747 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 1158254 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 1158459 57109333 ~ 57111840 (+) False LOC110496571

Expression Profile