RNA id: TU1790196


Basic Information

Item Value
RNA id TU1790196
length 203
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1564711
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56173004 ~ 56173206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctttaactatgtacagactcagtgagcattgcagacctggctctcaagagaatacAGGCTATGTTCAAACTGCCCAAAAGGGAGGTGGAAagtgagctgcacttcctaacctcctgccaaatgtatggccatattagagacacatatttccctcagattacactgaCCCACAAATAATTTGACAATCTCCCATATCTAGTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790125 lncRNA upstream 26297 56056406 ~ 56146707 (+) True G1564643
TU1789953 lncRNA upstream 222130 55948743 ~ 55950874 (+) True G1564492
TU1789924 lncRNA upstream 262898 55909557 ~ 55910106 (+) True G1564471
TU1789922 lncRNA upstream 264356 55908085 ~ 55908648 (+) False G1564470
TU1790205 lncRNA downstream 11055 56184261 ~ 56184491 (+) True G1564720
TU1790211 lncRNA downstream 16502 56189708 ~ 56190328 (+) True G1564726
TU1790322 lncRNA downstream 187775 56360981 ~ 56361211 (+) True G1564832
TU1790363 lncRNA downstream 257314 56430520 ~ 56430792 (+) True G1564870
TU1790378 lncRNA downstream 281698 56454904 ~ 56459925 (+) True G1564880
XM_036953304.1 mRNA upstream 959837 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 959837 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 1001610 55051875 ~ 55171394 (+) False LOC110496553
XM_036953310.1 mRNA downstream 396154 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 396181 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 396181 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 396181 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 396181 56569387 ~ 56704104 (+) False LOC110496558
TU1790095 other upstream 3801 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 121211 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 264070 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1033773 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1662258 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 858415 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 935922 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 936127 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 936127 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1678015 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile