RNA id: TU1790322


Basic Information

Item Value
RNA id TU1790322
length 231
lncRNA type intronic
GC content 0.61
exon number 1
gene id G1564832
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56360981 ~ 56361211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAGGAGCTCCTCTAAGGTGTGGATGTCTGGATGCTGTTTGCTCACGCCCTCCCTCAGCAGGACCACCTCCCCCTCCAGTTtggtgaactcatccctcatggcagccatggtggtgaggagggcCTGAGCCTGCTCTGCACTGAGGGGGTCACTCTCCTCCTGGGGCGTGTCCTCCACTATGGTGGGAAGAGGTGCTGGATGTGCCTTTTTGGGTGGGGAGAGTAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790211 lncRNA upstream 170653 56189708 ~ 56190328 (+) True G1564726
TU1790205 lncRNA upstream 176490 56184261 ~ 56184491 (+) True G1564720
TU1790196 lncRNA upstream 187775 56173004 ~ 56173206 (+) True G1564711
TU1790125 lncRNA upstream 214274 56056406 ~ 56146707 (+) True G1564643
TU1789953 lncRNA upstream 410107 55948743 ~ 55950874 (+) True G1564492
TU1790363 lncRNA downstream 69309 56430520 ~ 56430792 (+) True G1564870
TU1790378 lncRNA downstream 93693 56454904 ~ 56459925 (+) True G1564880
TU1790386 lncRNA downstream 108440 56469651 ~ 56469854 (+) True G1564888
TU1790387 lncRNA downstream 110259 56471470 ~ 56471691 (+) True G1564889
TU1790101 lncRNA downstream 111210 56472421 ~ 56472739 (+) False LOC110496862
XM_036953304.1 mRNA upstream 1147814 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 1147814 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 1189587 55051875 ~ 55171394 (+) False LOC110496553
XM_036953310.1 mRNA downstream 208149 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 208176 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 208176 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 208176 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 208176 56569387 ~ 56704104 (+) False LOC110496558
TU1790095 other upstream 191778 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 309188 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 452047 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1221750 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1850235 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 670410 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 747917 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 748122 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 748122 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1490010 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile