RNA id: TU1790390


Basic Information

Item Value
RNA id TU1790390
length 270
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1564892
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56473866 ~ 56474135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AtgtctatgggccctggtcaaaagtagtgcactatatagggaatagggtggtatttgGACGGagacactctttctctctttctctctctctgtctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctttctctttttgtgtctatctgtgtttctctctctctgctgtctctctgctctctgtctctctctctctctctctgctctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790101 lncRNA upstream 1127 56472421 ~ 56472739 (+) False LOC110496862
TU1790387 lncRNA upstream 2175 56471470 ~ 56471691 (+) True G1564889
TU1790386 lncRNA upstream 4012 56469651 ~ 56469854 (+) True G1564888
TU1790378 lncRNA upstream 13941 56454904 ~ 56459925 (+) True G1564880
TU1790363 lncRNA upstream 43074 56430520 ~ 56430792 (+) True G1564870
TU1790093 lncRNA downstream 5231 56479366 ~ 56486454 (+) True G1564616
TU1790089 lncRNA downstream 26585 56500720 ~ 56504444 (+) False LOC110496862
TU1790091 lncRNA downstream 26585 56500720 ~ 56504444 (+) True LOC110496862
TU1790394 lncRNA downstream 30973 56505108 ~ 56505317 (+) True G1564896
TU1790398 lncRNA downstream 34149 56508284 ~ 56508487 (+) True G1564900
XM_036953304.1 mRNA upstream 1260699 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 1260699 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 1302472 55051875 ~ 55171394 (+) False LOC110496553
XM_036953310.1 mRNA downstream 95225 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 95252 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 95252 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 95252 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 95252 56569387 ~ 56704104 (+) False LOC110496558
TU1790095 other upstream 304663 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 422073 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 564932 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1334635 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1963120 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 557486 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 634993 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 635198 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 635198 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1377086 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile