RNA id: TU1790093


Basic Information

Item Value
RNA id TU1790093
length 4993
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1564616
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56479366 ~ 56486454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCACCTCTCGTCGTCACCTGTGAAATAGTATCGTTAATAAGCGCATCTAGCATCTTCACAGcgatgtgtgagtgtgtttgttgtCACCTAGTGTGGTAATGTTAGTACTGAGcatcctccccctctcacacacacaccttttagtTAGAGAACATACTAAGGGCTCAATCCAAACTTGACATCCACACTTCTATCTCAATCTTGTAACAGTGACAATGATGTAACAGTGATATTAACACTGCACAGAATGTAGTGACCAGTAGAAAAATGATCTTAAATTCACTGGATCACATATCCATTCTAGTGCACAACTCTTTGGTTTTCAAATGCAATTTAATTATGTAACTTAAATGTATTATAAACTTGTTTGTTAAACTTGAACCAGAGCTAACCATGACTAAAGCTATTcttttatttctttgtttttgtgcTTTTGAATGTTCAAATGCCTTAACATTTTTAACAATGCACAGTTTTATTGGGCTGGAGAGCAACATAACTACCTCATAAACATTTCATAACCTTTTTATTCCAAGCATAATAAGAGCTAAGGGATGTGCAATGTCACCTTTtatcagcctgtgtgtgtgtctacgtgcattcgtgcgtgtttgtgtatttgtctgtgcacgtgtgtgtatggCTATGTGTTTGTAggtgcttgagtgtgtgtgtgtatgtgtgtgcgtgtctacgtgtttgtctgtgtgtgcttgagtgtgcttgtctttttgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtatgtctcagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtgggggaaATAACGTCTGCGTATCGTTAATGCACCATTAGCACCAGACTAAGGAGTCCCTGCTTTCACTGACCTTCATAGAGCTTATTTCATCAAGATTTAAACACcactcagacacacatacacacacatacacacacatacacacctcatCTCCAGGAGCTGCAGTACAGATACGGTACATCAGACAGTGATGAGTTATTCAGCCTTGATATCTGTACTTTCCCAGGGCACCTGTAGTCTGCTGGTTCACATCTCATGTACACTGGAAGCAGAGgaacagaggacacacacacacacacacacacacacacacacacacacacacactgaggcacacacacacactgagacatacacatacaccctgagacacacacacacacacacacacacacacacactgaggcacacacacacactgagacacacacacacaccctgagacacacacacaaacacaccctgagacacacacacacacaaacacacaaacacacacacacacacacacattgagacacacacacacaaacacacactgagacacacatgacacacacacgctgagacacacacacacacatacacacatacacacacacactgagacacatgcacacagatacacacatacacacacccttaCACTTCTCATATTTCCCAGGCCAGAGCAGCAGCCTCTGCTGTCGTTTCTCGTTTCCTCAACCTCTTGATGAAGTGTTCCAGGATCACCACCCAGTTCTCTCTTCAGTTATTACTGGGCAGCAAAAAGGACCAATCACAGAATACTGAGCCAAGCATATGTTTGCCGGTTTACTAGTCATTTGATTCCGTTCAGAACTATTCTAGGCAAAGCATGTTGAGGAACTGACATACTGGATTTAAGTCATTCTAacacacataaactcagcaaaaaaagaaacgtcaatACATAActagattcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaatggaataatgtgtcactGAACaatggggggtcaaaatcaaaagtggccaccagctgcattaagtactgcagtgcatctcctcctcatggactgctccagatttgccagttcttgctgtgagatgttaccccactcttccaccaagtaacctgtaagttcccggacatttctgaggggaatggccctagccctcacccaccgatccaacaggtcccagacgtgctcaatgggattaagatccaggctcttcgctggccatggcagaacactgacattcctgccttgcaggaaatcacacacagaatgagcagtatggttggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgttgagattgcctgcaatgacagcaagctcagtccgatgatgctgtgacacacctctccagaccatgacagaccctccacctccaaatctatcccactccagagtacaggcctcggtttaacgctcattccttcgacaataaatgtgaatccgaccatcacccctggtgagacaaaaccgtgactcgtcagtgaagagcactttttgccagtcctgtctggtccagcgacgatgggtttgtgcccataggtgacgttgttgccggtgatgtctggtgagaacctgccttacagcaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggagtgtgcattcctggtgtaactcgggcagttgttgtcgCCATCCTGTACCagttccgcaggtgtgatgttccaatgtaccgatcctgtgcaggtgttgttacacatggactgccactgcgaggacgatcagctgtccgtcctgtctccctgtaggactgtcttaggcatctcaaagtacagacattgcaatttgttgccctggccacatatgcagtcctcatgcctccttgcagcatgcctaaggcacgttcacgcagatgaacaGGGACAGTGGGCATCTTTTTTTTGGTGTTTTTCTGAGTCTgttgaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgtctgcaagctgttagtgtcttagcgaccgttccacaggtgtatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaagttatttttatgaattatctttgaaagaaagggtcccgaaaaagggacgtttatttttttgctgagtttatatacagtcatactaacacacacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacaaacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacgcatacacacaatcttactaacacacacacatacaaacagtcttattaacacacacacatacacacagtcttactaacacacacacacacatacacacagtcttactaacacacacacatacacacagtcttactaacacacacacatacacacagtcatactaacacacacacataaacacaatcttactaacacacacacacatacacacagtcatactaacacacacacatacacacaatcttactaacacacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacacatacacacagtcttactaacacacacacagacacacagtcatactaacacacacacatacacagtcttactaacacacacacacacacacagtcttactaacacacaaacatacacacaatcttactaacacacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacacatacacacagtcttactaacacacacatacacacagtcatactaacacacacacatacacacaatcttactaacacacacacgcatacacacaatcttactaacacacacacatacacacagtcttattaacacacaaatacacacagtcttactaacacacacacacacatacacacagtcttactaacacacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacacatacacacagtcatactaacacacacacacacatacacacaatcttactaacacacacacacatgcacacaatcttactaacacacacacatacacacagtcatactaacacaaacacacatacacacaatcttactaacacacacacgcatacacacaatcttactaacacacacacatacacacagtcttactaacacacacacacatacacacagtcttactaacacacacacatacacacagtcatactaacacacacacatacacacaatcttactaacacacacacacatacacacagtcatactaaaacacacacacatacacacaatcttactaacacacacacacatacacacaatcttactaacacacacacatacacacagccttactaacacacacacatacacacagtcttactaacacacacacatacacacagtcttactaacacacacacatacacacagtcttactaacacacacacacatacacacagtcatactaacacacacagacatacacacagtcttactaacacactaacacacatacacacagtcttactaacacgcacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacatacacacagtcttactaacacacacacacatacacacagtcacactaacacacacacatacacacagtcttactaacacacacacatacacacaatcttactaacacacacacatgcacacagtcttactaacacacacacacacacacacacatacatacagtcttactaacacacacacatacacacggtcttactaacacacacacattcacacagtcatactaacacacacacatacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790390 lncRNA upstream 5231 56473866 ~ 56474135 (+) True G1564892
TU1790101 lncRNA upstream 6627 56472421 ~ 56472739 (+) False LOC110496862
TU1790387 lncRNA upstream 7675 56471470 ~ 56471691 (+) True G1564889
TU1790386 lncRNA upstream 9512 56469651 ~ 56469854 (+) True G1564888
TU1790378 lncRNA upstream 19441 56454904 ~ 56459925 (+) True G1564880
TU1790089 lncRNA downstream 14266 56500720 ~ 56504444 (+) False LOC110496862
TU1790091 lncRNA downstream 14266 56500720 ~ 56504444 (+) True LOC110496862
TU1790394 lncRNA downstream 18654 56505108 ~ 56505317 (+) True G1564896
TU1790398 lncRNA downstream 21830 56508284 ~ 56508487 (+) True G1564900
TU1790796 lncRNA downstream 210406 56696860 ~ 56697134 (+) True G1565273
XM_036953304.1 mRNA upstream 1266199 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 1266199 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 1307972 55051875 ~ 55171394 (+) False LOC110496553
XM_036953310.1 mRNA downstream 82906 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 82933 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 82933 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 82933 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 82933 56569387 ~ 56704104 (+) False LOC110496558
TU1790095 other upstream 310163 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 427573 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 570432 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1340135 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1968620 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 545167 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 622674 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 622879 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 622879 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1364767 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile