RNA id: TU1790677


Basic Information

Item Value
RNA id TU1790677
length 3429
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1565171
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56492657 ~ 56496239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACTTCTCTTCTCTACTTACACTCGAAGAGTTCTTTTCACCTCCGGCAGACGAAATGCTCCATCGCTTTTCCCTCTGTTGCGATAAGATgggagggggagaaaaagaggaggaaggaagagagagaaagagagagagagagtgagaagaggggGGAATCACAGTCACTGACAGCTCTgccctgaaacaacaacaacactattgttcttccatctccactggCCAGCGGTGTGTTGTTCCCTTCCAATTGATATattcccccttttcctctcctttTCATACTCCTCCTCTCCCGTTCTCTTGTGGCACATTATATGAAAAGAGAAACAcccccactcacacacactgcacagtgaAACGTCAGACACACACTGCACGGTGAgacgccacagacacacactgcacaGTGAAACGTCAGACACACACTGCACGGTGAAacgccacagacacacactgcacaGTGAAACGCCACAGACACAGACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgcaacagacacacactgcacagtgaaacgccacagacacacactgcacaGTGAAACGCCCCAGACACACACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgccccagacacacacagcacagtgaaacgccacagacacacactgcagGAAACACACAAACAGTTGGAAATACGTAAAGGCTATAGCTATACTAATCTAATCATAAGAATGAAGAAGGTCAGGACAGTCCTGGTCActggcaatagagagagagaaacagagtggtcAAGGGGAGGAGAAGGATGAAGTTGCCCCTGGACACTTCTCTAAGGTCAGTTTTATTATTTCCTCCCTAATGGTTAAGCTTATGATTTTGGGAGGGTAAGATTATCCTAGATCTGTGCAACTTCTGCATCCCCATCCTCTCCACACTGGGctccaatctggcaaccctcCATACATCCAGACCCTCAACCTGGCGACCGAGCTGGCGAAGCGGTGGAAAGCTTGATGGTGCTGATTCTCTGTGTTTCACCTCAgaccttctcctcttctccctctttatCACTGCCCTTtgccctctccctcattctctgttcattctctatcatttgtcttctcctcttcctcttgttcTACCATCCCTCACTCTTTCTCACGGGGTATTTTCCTGAATGCCCCTGTCCTTCCCGCTCTTAATCCATactcacctatctctctctcactatctctctcttgtCCTCAGCTCTATCTCCCTATACAATCTGGTCTGTCTCTTTCTGGGATCATGCCTCTATACCCCACTGATCTAACACAAAGAaacaagtgagaaagagaggaaaacGACGTCAGGGAAACCGACagcatccccaccaccaccaccgtcaTCCAAGCAGGAAGTGACACCACAGCAACATCACCCGTCAAAGTTCACAAAGAGAAGAAAATATACAAAGGAAGCGGTCAGAGACCTCACTACAagcattacaccagtacatatgTTCAGGTGGAAAGAAGACAGGGGAATCAGTGCAGAAACAGAAACACAGTcctccacacaccacacaccacacaccacacactacacactacacaccacacaccacacaccacacaccacacactacacactacacactacacaccacacaccacacaccacatactacacaccacacactacacactacacactacacactacacactacacactacacaccacacactacacactacacactacacactagagcTTTACAATCATCTATCTATTTGTCTACAGAGAAATGTACTATGGTATGGagtggagagaacacacacacacagccagaccaGCAAACTTAGAGGGATGAAGGGGGGTGAGAAGAGTTGATTTTGGGGGTTGgaggatgtggggggggggggggggggggggggggtctgtgttgggttttattttacctttcttGTGCTGGCTGCCCTTGGTTCTGCTTGCTGCCTGGCTACAGTCAAACTAAGACAGAGAGACATGTGGCACCAAGCATGACGAAGCCCAACCCAGACAAcatacaaacaaaaacaaaccaaaaGAGCCAATGAAATAACAACGTACCATccagtaacagacagacagtcagttacAGACTCACAGGCatcaaaataaaatgtacatGAAATAAATACACACATGTATGAATTAGAAGACATTTAAATGATTAGATACGGTAAACAGAATGACCAATGGACACCAAGCGAGGCCAAGCATGCAGAGCCCGGGCCAGAGATGAGTGGGTACCAGAGGGTCAGGTAATAATACAGGAAGTAGAATTGTTCTCGGTTCTGATGAGGCAACAGTGGGCTTTGGGTCTCTAAACCAAAAAGGGCTCTGGTGGACTCTCAAGttacaatatctctctctctctatctcgccggttccctctgtctctttccctcactctctctctctctcgccggttccctctgtctctttccctctctctctctctctgtctctctccgttttGACCGTTTCCTCTCTCCATGACCTGTatcttcccactctctctctcaaatctcaTTACAAAGCCCACATGCCTGCAGGGATACAACGCATGAGCTTCCTTCTCCATTTTGAAACGTTAGATGAACCCTTTTAGAGATATCTTGCCATTACCACAACCAATCATACCATCATTATTCTGTACCAAACAATCACTGAGTACAACTAACCGTTGAGTGGAATTATAAACAAGCTTGGTATTGTAGTAATAGGGGTCTTCAAAGGGACCAGTAAACGCGGAAACAAATACAATCTATTAAGGGCTACACATTTCTGTCAAATGAGAAATCAGACACAGATTGTAGTGTGCTACAGCATGGCCACTGCAGTCCTATTCAGGGTCATGTTCTAGTCCCTCTCCATAAACAGTTCCGGCAAGCGACTTGGCCCTTTTCACCTCTCCTCTTGATTGGTCCAAGGACACTAAATTAGCTGCATTAGCATAGTGCCCCTTAGTGCGCATTGAAGCTAGCGTTAGGTTTGTTCTGTCTGggctaactgtctcctcattagGCCCCACTGATAGAGCCAGGAAGTGCTAGCATGCTAGGCTACGATACACCATGCCAACACTTGGATTTTATGGGCAATTTGATGAAAACAGATGATGAGTTTATACTGGGCGCAGAGGAATGGAAATAATTAAAAACAGGCTAATGAGAGGAATTAATTATTCTATTAATGCCTCAATTGCGCCACTGAAGGCTGAGTTTAAAGAGAAACAAATGAGTAAATGAGTGGaaaactgagagggagagagaaagaagagaaatgTCAGGCCCTAGGAACAAATAGAGGAGAGcatgagatggagaggggaagaggaagagagagagagagagagagagagaaagaaagagaaagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790668 lncRNA downstream 27495 56464851 ~ 56465162 (-) True G1565163
TU1790652 lncRNA downstream 29082 56462935 ~ 56463575 (-) True G1565148
TU1790624 lncRNA downstream 83993 56406486 ~ 56408664 (-) True G1565125
TU1790595 lncRNA downstream 128846 56363502 ~ 56363811 (-) True G1565097
TU1790568 lncRNA downstream 162774 56329616 ~ 56329883 (-) True G1565070
TU1790649 lncRNA upstream 6057 56502296 ~ 56504360 (-) True G1565146
TU1790685 lncRNA upstream 13987 56510226 ~ 56510436 (-) True G1565178
TU1790847 lncRNA upstream 66976 56563215 ~ 56563496 (-) True G1565322
TU1790848 lncRNA upstream 70857 56567096 ~ 56567331 (-) True G1565323
TU1790930 lncRNA upstream 200583 56696822 ~ 56697137 (-) False G1565401
XM_036953300.1 mRNA downstream 1638813 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 1652735 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 1839725 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 1940340 54525695 ~ 54552317 (-) True tpd52
XM_036953286.1 mRNA downstream 1958394 54525695 ~ 54534263 (-) False tpd52
XM_036953314.1 mRNA upstream 208613 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 232102 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 232102 56728341 ~ 56737381 (-) False LOC110496560
LOC110496863 mRNA upstream 562298 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 571601 57067840 ~ 57070602 (-) False LOC110496566
TU1790620 other downstream 4368 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 1827014 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 1839807 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 2597708 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 2617065 53874410 ~ 53875592 (-) True G1562828
TU1790882 other upstream 232113 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 1531272 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 1579384 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1671145 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1914260 58410499 ~ 58411129 (-) True G1567080

Expression Profile