RNA id: TU1790937


Basic Information

Item Value
RNA id TU1790937
length 2572
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1565404
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56701428 ~ 56704109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATCTGCTTAAAACATTTTATTAACTTTTTCTGAAAcgttttcataaaaaaaaaacatctctttACAAAAAGTGATGCCAACATAAAACACACAACAGATATACTGAGAGTAGCAGGGGAACAGTGGTGTTGTTTCAACAAGATGTTTATGAAAGCTAGGAATGAAGAGGGGAGAACTATTGGGGTGGTTGTTCAGTATAACTAGGGTCAGTAGGTTTTCCTGACCAGAAATCACTATGGACAGTGAAAATATCAAGAAAACCTCATGGCCCTTCCAATAACAACTCAGAACATCCATATGAATCTAAACATGGTGACAAATCCCTTACTGACACCCTTACTGACACCCTGGCCTGTAGTGTATAGATGACAAGTTAAACTGCATGCATTcaaaacaacacaacatacaAGGCAGGAGACATACAAGTTGTATTCAGTCATGGATACGAGGGGAAGCTGATTGGCACAGCGATGCCAGCGAAGGGTTGGGTGAAGATGCTAAACAGCCTCTCCTATGAAAATTCAGCCTGTTTCTCTTAGTGGTCATAAAGCATATATTTCCATTAAGCATAGCAAAATGACGGCAACTTGCCCAAAGTCCCCAGGTTTTCCATAAATCCTGGTTGGTGGATTCCGAATGTTCTGCTTATCCCCTCCCTCTTCCAAACAAGGATTTCTGAAAACCCTGGGAACTTTGGGAAAGTTACCTGAATTGTGCAACCCTATTTCAGTTACAGTAACCAGTGGTGTGCTGGACGAGAAAAAAATAGTCCTTTACAGTTGCTCTGTTGTCAAAAATAAGCTTGATAATGTAAGAGACTTGTTGATAAATTCCTACATAACTAGAATTATTTTTTTGTTGCCAGTTTTGAGGCAgttttgaaaatgatgccatgTACTTTATACAAAGGCAAGCATGAAAATATCTTCCAAAGCATAATTATACCACCATATAGAAATCCAATTTACTTTCACATAAAAAGATAATTTCTCTCCAATTTCTTGTATATTTTATGAACAAATAACTCTTATAAAAACCACACTCATTGTGGATTCCTGACAGTTGACCATAGCGAAAACATGGTTAGCCATGTTGACGCCAATTCCAAAATCCAAAAGGCATAAAAAGCTACTACATATAAATAGAAATATGTACAAAACAGGCACTCTTGGGAGGTGTACATTATGTTCTTCTCACGCAAACAGGGAAGAGAAGGTGAGAACTTCTCATAAGGCCATGATTTGAGGACATAGCGTACAGATCTGTTAAAGCATCAGACATCATTCAAGTGATGAGGGAGTATATTCAAGCATAGAAATCAAACAAAATGTACAAAGAGATAGAACGATTAGAATGGGCATTTGAAATGGGAGTGCCATGTCAATTCTATTCATTTTGTTTCTATGGCTAGACAGAAGCTAGATCGAAGCAGAATATCACAAGGTAGCTGCCTAATACTCCCAATGGACACGTTTTATAATCAGAATGAAGATGAGGATGATAGTGAAGAAGAGGAAGGATTTGCAGGTCGTTTTTCAAAGGCTGGATATGCTCTTGCTGTTATTGTCAAAATAAACATGTCTAACGTATAGAAAGAGCTGGCAGCTAAAGTTGGGAAAATttatgaaagagaggagagcacaGCGTCCAAATATCTCCTTTATTGAAGCCACTTCAGCCAGTACCAAGGCATCAGTTAGAGGAAGGTCCTACACATATAGATTTTCTACACAGGCGGTGAGAAGGACAGCTAACTGGCAAACCCTTTGATGAATTAGGGATGGGTCCTCCACACCAACTATTGGTGCTCCAGTATTCATTTGTTCTCCTGGGATGATTTCTGTTGATCGGACGGAAGCTCTGGTCTTCTGTTTgatctgttctctcttctcccctcctctcctttctctagtGTCTTCTGGTCTCTGGGTTGGTTTCTTCTATCTCCCCTCGTCTCCTTTCTCTAGTGTCTTCTGGTCTTTGGGTTGGTttcttctatctctcctcctctcctttttctAGTGTATTCTGGTCGTTGGGTTGGTttcttctatctctcctcctctcctttctctagtGTCTTCTGGTCTTTGGGTTGGTttcttctatctctcctcctctcctttttctAGTGTATTCTGGTCGTTGGGTTGGTttcttctatctctcctcctctcctttctctagtGTATTCTGGTCGTTGGGTTGGTttcttctatctctcctcctctcctctctctagtgtctTCTGGTCTTTGGGTTGGTTTCTtctatctcccctcctctcctttctctagtGTCTTCTGGTCTTTGGGTTGGTTtcgtctatctctcctcctctcctctttaatACTTTCTCTCTAGTAGGGGCCCTTGATGGGAGGGCCCTTAGGGTTCCACTCTATTGGTTGGCTCATACAGTCAGTGGGGTTACACCGGCCCTCCCTGCCCTTCTGACCCGGCTGTCCAGGGGTTCCTGAGACTCCAGGGATCCCCTGCTGACCCACGGGGCCGCTGGGGCCCATCTTACCATAGCCAGGGGGGCCTGGAACACCtggggggaggggc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790930 lncRNA downstream 4291 56696822 ~ 56697137 (-) False G1565401
TU1790931 lncRNA downstream 4291 56696822 ~ 56697137 (-) True G1565401
TU1790848 lncRNA downstream 134097 56567096 ~ 56567331 (-) True G1565323
TU1790847 lncRNA downstream 137932 56563215 ~ 56563496 (-) True G1565322
TU1790685 lncRNA downstream 190992 56510226 ~ 56510436 (-) True G1565178
TU1790995 lncRNA upstream 75845 56779954 ~ 56780159 (-) True G1565461
TU1791075 lncRNA upstream 141165 56845274 ~ 56849179 (-) False G1565536
TU1791076 lncRNA upstream 143300 56847409 ~ 56849179 (-) True G1565536
TU1791117 lncRNA upstream 192090 56896199 ~ 56896418 (-) True G1565574
TU1791118 lncRNA upstream 193434 56897543 ~ 56897751 (-) True G1565575
XM_036953300.1 mRNA downstream 1847584 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 1861506 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 2048496 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 2149111 54525695 ~ 54552317 (-) True tpd52
XM_036953286.1 mRNA downstream 2167165 54525695 ~ 54534263 (-) False tpd52
XM_036953314.1 mRNA upstream 743 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 24232 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 24232 56728341 ~ 56737381 (-) False LOC110496560
LOC110496863 mRNA upstream 354428 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 363731 57067840 ~ 57070602 (-) False LOC110496566
TU1790620 other downstream 213139 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2035785 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2048578 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 2806479 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 2825836 53874410 ~ 53875592 (-) True G1562828
TU1790882 other upstream 24243 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 1323402 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 1371514 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1463275 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1706390 58410499 ~ 58411129 (-) True G1567080

Expression Profile