RNA id: TU1791017



Basic Information


Item Value
RNA id TU1791017
length 283
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1565483
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56816527 ~ 56816809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATAAATCTGTCCAGAATGTCTCAGAAgtgatttaaatgtattttgcgtcGTTGTGAAAATACTTGTGGATTAATCAAGCCCTGGATGCTGGCGTTAGATCAACTAGCTCGTATCATTCTTCAGTGGATTTCAAAGCTGTGCTCCACAACTTGATCGTGCCTCTACGCATTTCTGACATGTGGCAGGCACCTGGTCGATTTGTAAAACTGGCATGTTCTCTATTGACATAGGCTATCTTAAATGTCACTCTTCTTTGCCAAACTGTTGCGCTTGAGTTGTTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1791010 lncRNA upstream 8175 56807871 ~ 56808352 (+) True G1565476
TU1790721 lncRNA upstream 51111 56725947 ~ 56765416 (+) True G1565206
TU1790832 lncRNA upstream 67138 56748332 ~ 56749389 (+) True G1565307
TU1790796 lncRNA upstream 119393 56696860 ~ 56697134 (+) True G1565273
TU1790398 lncRNA upstream 308040 56508284 ~ 56508487 (+) True G1564900
TU1791061 lncRNA downstream 71838 56888647 ~ 56888928 (+) True G1565523
TU1791062 lncRNA downstream 72270 56889079 ~ 56889329 (+) True G1565524
TU1791067 lncRNA downstream 83355 56900164 ~ 56900477 (+) True G1565529
TU1791071 lncRNA downstream 88714 56905523 ~ 56905833 (+) True G1565533
TU1791186 lncRNA downstream 181928 56998737 ~ 56999042 (+) True G1565639
XM_036953307.1 mRNA upstream 112423 56569387 ~ 56704104 (+) False LOC110496558
XM_021572530.2 mRNA downstream 4725 56821534 ~ 56833489 (+) True LOC110496561
XM_021572532.2 mRNA downstream 28364 56845173 ~ 56849827 (+) False LOC110496562
XM_021572531.2 mRNA downstream 28390 56845199 ~ 56849827 (+) True LOC110496562
XM_036953315.1 mRNA downstream 44688 56861497 ~ 56876018 (+) False LOC110496564
XM_021572534.2 mRNA downstream 44695 56861504 ~ 56876018 (+) True LOC110496564
TU1790095 other upstream 647324 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 764734 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 907593 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1677296 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 2305781 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 214812 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 292319 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 292524 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 292524 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1034412 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile