RNA id: TU1792216


Basic Information

Item Value
RNA id TU1792216
length 211
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1566539
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57377310 ~ 57377520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGAACCTGCTGCTGGAAAATGCCATTCACTCATTAACCCCGGacgtcatcattacacacacctggaacCAATCCCCAatctatcactgtatatatactccctCTGTCATGTGTCTTTGTCGGTCATTAAACATGTTGtttgttttcctgagaggaatctctcctactatttcctgagaactttattattttgcactttgGGTTTCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791471 lncRNA downstream 107671 57269338 ~ 57269639 (-) True G1565893
TU1791459 lncRNA downstream 126775 57250272 ~ 57250535 (-) True G1565881
TU1791457 lncRNA downstream 127082 57250015 ~ 57250228 (-) True G1565879
TU1791441 lncRNA downstream 158493 57216045 ~ 57218817 (-) True G1565864
TU1791431 lncRNA downstream 172026 57205054 ~ 57205284 (-) True G1565856
TU1792223 lncRNA upstream 9280 57386800 ~ 57387043 (-) True G1566546
TU1792224 lncRNA upstream 9886 57387406 ~ 57387641 (-) True G1566547
TU1792230 lncRNA upstream 15423 57392943 ~ 57395443 (-) True G1566553
TU1792187 lncRNA upstream 41386 57418906 ~ 57420234 (-) False LOC110496581
TU1792245 lncRNA upstream 48114 57425634 ~ 57427510 (-) True LOC110496581
XM_021572551.2 mRNA downstream 3518 57336342 ~ 57373792 (-) True LOC110496580
XR_005037334.1 mRNA downstream 92920 57279066 ~ 57284390 (-) True LOC110496951
XM_021572548.2 mRNA downstream 229031 57146149 ~ 57148279 (-) True LOC110496578
XM_021572547.2 mRNA downstream 242515 57131465 ~ 57134795 (-) True LOC110496576
XM_021572546.2 mRNA downstream 247079 57124127 ~ 57130231 (-) True LOC110496574
XM_021572552.2 mRNA upstream 42427 57419947 ~ 57426003 (-) False LOC110496581
XM_036953335.1 mRNA upstream 119119 57496639 ~ 57525253 (-) False LOC110496865
XM_036953336.1 mRNA upstream 119119 57496639 ~ 57525257 (-) False LOC110496865
XM_036953339.1 mRNA upstream 119119 57496639 ~ 57567781 (-) False LOC110496865
XM_036953342.1 mRNA upstream 119119 57496639 ~ 57567781 (-) False LOC110496865
TU1790882 other downstream 639963 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 889021 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2711667 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2724460 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3482361 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 649991 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 698103 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 789864 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1032979 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1491843 58869363 ~ 58870007 (-) True G1567875

Expression Profile