RNA id: TU1791525


Basic Information

Item Value
RNA id TU1791525
length 1438
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1565938
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57439717 ~ 57441240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaactaattcatatttacaatggcggcctacaccgaccaaacccggacgacgcttgggccaattgtgcaccaccatatgggactcccaatcacagctggttgcgatacagcctggattcaaaccagggtgtctgtagtgatgcctctagcacagatgcaatgccttagacggGAGCCCCAGAGAAGTCAGATTTTAAAAGTCCTAAAAACACATTTTAGTCATGacttagtgtaacagtataactttaaaccATCCCCTCGCCCGGGCTCGAACCacggaccctctgcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaactactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgctatttagtgcgcaccaccgctaactaagctagccatttcacatccgttacactagtgCACAAAATACCCATTCAATTATTCAAATAATTGACGCTgaggacaaaaaaataaaataatgtatcaCTCACAACGAAGATATTAACATTTTATATTCATCCAAAAATGTCATGTTTTTGGATGACGTCGCCGCTGGTTGCGCTGCTCCCTGTGCGCAACCGCCCAAGACCTGTTTCTAATagtaatacatgtattttatattgCGCTTTTCATTAAAGAGAATCTCAAAGACcctgtaaaaacaaacaaaacaaatgtagAGATCTGTCAGGTCTTGGGCGATGGTCTTCCACAGATTCAGATGATAACGTCATGTTCAGACAGGCAGTTCAGAAAGGCTGGGCAGTAGTTTACGAGGAGGGAGCTTCGATGGCACAGAGAGGGAGCAGTGTCAGTCAATTACTTAGACAAGCCCAGAGATCTTCATCAGGCACCTCGTCtgttgtctcctcctcctctgtaggtAGGCTGGATAGTCCACTACTGAAgtgtagcacccacctgggtgatgctTGGCAGCTATAAGCGCCAGAAAGATCACCACACATAGGCAGTAGTCAGGAAACAGTTCCCAATGAGGTGGGCCCTCTCAAGTTTAAAAtgtttaatgtcacatgcacaagtccACATCGTTGATGCAATAAAAAAATCAGCTTATGCTGTATTGATGCGTCATTCAAATGATTGAATAACCAGCTACCTAACCACCTAGCCAAGACGAAAACAAAAATGTCGTGCCATTAGTCCAGCAACTCCATTGGACAAAACCACCCAATATTAAGAAAATTCAAGAAGTCACAAAAACAAATAATTGCTTAAAAATGCAATCaaaataattaaaacaaaatatttacaaatgtaCAGGAGCCCTCTGCATAGTCTTCCTCACCACGCCACTGCAACAACGGAATGCTGATCAATATACATTTATGCGAAGACTTTACGAGAACAGATTACCTTGAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791572 lncRNA upstream 9932 57429492 ~ 57429785 (+) True G1565977
TU1791553 lncRNA upstream 53015 57379653 ~ 57386702 (+) True G1565958
TU1791487 lncRNA upstream 113734 57325583 ~ 57325983 (+) True G1565906
TU1791511 lncRNA upstream 120770 57317522 ~ 57318947 (+) True G1565927
TU1791468 lncRNA upstream 178607 57260770 ~ 57261110 (+) True G1565890
TU1791622 lncRNA downstream 78798 57520038 ~ 57520867 (+) True G1566024
TU1791718 lncRNA downstream 214033 57655273 ~ 57655494 (+) True G1566109
TU1791768 lncRNA downstream 327146 57768386 ~ 57769136 (+) True G1566158
TU1791806 lncRNA downstream 380370 57821610 ~ 57885127 (+) True G1566194
TU1791837 lncRNA downstream 405589 57846829 ~ 57849957 (+) True G1566217
XM_036953327.1 mRNA upstream 19712 57390772 ~ 57420005 (+) True LOC110496864
XM_036953328.1 mRNA upstream 21020 57390771 ~ 57418697 (+) False LOC110496864
XM_036953325.1 mRNA upstream 103435 57292752 ~ 57336282 (+) False tax1bp1a
XM_021572556.2 mRNA downstream 137 57441377 ~ 57476399 (+) False LOC110496582
XM_036953329.1 mRNA downstream 137 57441377 ~ 57476399 (+) False LOC110496582
XM_036953330.1 mRNA downstream 137 57441377 ~ 57476399 (+) False LOC110496582
XM_036953331.1 mRNA downstream 137 57441377 ~ 57476399 (+) False LOC110496582
XM_036953332.1 mRNA downstream 137 57441377 ~ 57476399 (+) True LOC110496582
TU1791304 other upstream 327754 57109333 ~ 57111963 (+) False LOC110496571
TU1791310 other upstream 327877 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other upstream 327877 57109333 ~ 57111840 (+) False LOC110496571
TU1791219 other upstream 407754 57031621 ~ 57031963 (+) True G1565672
TU1790119 other upstream 1387924 56050588 ~ 56051793 (+) True G1564638
TU1791820 other downstream 409981 57851221 ~ 57863046 (+) True LOC110496591
TU1791842 other downstream 475375 57916615 ~ 57920646 (+) True LOC110496592
TU1791846 other downstream 499857 57941097 ~ 57946763 (+) True G1566224
TU1792104 other downstream 923016 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 1429659 58870899 ~ 58873690 (+) True LOC110496618

Expression Profile