RNA id: TU1792378


Basic Information

Item Value
RNA id TU1792378
length 1274
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1566667
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57631777 ~ 57633115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGGTTGTACATTGATTGGGATAAGATTTTTTACTGGTCCGTCAGGAAAAAGTCCTGGCCCTAACCATTCGTATCTGCAAGGTGAATCAACAAGGACTAACAGTCTGGGTACTGACAAAGAGGATAGAGATGAAGTTGGAATTGATCAATTGTAACCACTTGGTAATCATCTGCTTATTGACAGTTACATTCGACTTGTTATACACCATCTAAAATcaaagtaaaaatacatttttgaagcCTTCAAGGAGAGTGCAAATAAAATTCTTTGGATTATCACTTgtatcctttaaaaaaaaagtatactgTACAACAGCTAAATAGTTttttatatcatatatatatatacacacatatatatatatatataaaacagctaaataGGACTCTTCAAATCTACATATTAACACCAGGAGCTTCTGCAAACTCAAATACATAATTTCCAAAACTACCATGAGTGCATTGTTTAGTTGAGCAACTTCTGATATGGATGAGATTTAAAGAAGCAGTACAGCAAATTCGTAGTCGGTCTGTCCAAGGGATAAAATATCGGGGTGGCTGTGCCATTCATATTCATCATCAGCTTCCTTGAAGACTCCACAGAGTACAAACATTTGTTCATTTCCTCTACTGTTGTTGATGCTTTGTTGTTGCCCATAGACATCCTCAAAGACAGCCGCAGTTTGTAGACCCTTTCATGAAAAAACAATTAGGGAATCTAAAATGTATGCCTAAGAGTCCATGACTGAGAGTATTAAAAAAGATGCTCAAATGTCTATGTAAAAAAATGTCAATCAGCCAAGTAGTTATTGGAAAGGTACAGGCAGTCAGTCCTTTCTCAGGGTTAGGTTAGTTTTAAATGATCTAGAATACATCCTCACTCTTTTCTTCCTCCCATGAGCTAATCACTGATCTGTAAATGAATGGATAAGCAAAAGGAAAGTTACCACCTGACCATCCTTATTAGATCAGTGACTACCTAAAGAAGAAAGGATGCACTTTTTACTTGAACAAGGCCTCAATCACTACCCACACTACTATACCCCTGGGCGAGGTCTGTTGGGTGTTTGTGGAGGGAGGCGAGGTGTTTCCAGGCGGTGGTTGCCTGGCGTGTCCTGCTTGTGTAAGGCAACTGGAGCTGAGGCCAGGGAGCCTGCTGCAGGATGGGAGGAGTTAGTGGCTGAAGTGTTGGCGACCAGCTCCATCTTCCCCTCCAGCTTGACCAGGCGCGTCAGGATGTCGTCCAGCAACACTGCTATGGTCCTCTTCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792367 lncRNA downstream 176 57630735 ~ 57631601 (-) True G1566660
TU1792351 lncRNA downstream 47371 57584083 ~ 57584406 (-) True G1566645
TU1792312 lncRNA downstream 113083 57518140 ~ 57518694 (-) True G1566620
TU1792262 lncRNA downstream 180245 57450926 ~ 57451532 (-) True G1566579
TU1792249 lncRNA downstream 190194 57439678 ~ 57441583 (-) True G1566568
TU1792398 lncRNA upstream 9624 57642739 ~ 57644028 (-) True G1566683
TU1792401 lncRNA upstream 13919 57647034 ~ 57648817 (-) True G1566685
TU1792404 lncRNA upstream 17958 57651073 ~ 57651788 (-) True G1566688
TU1792436 lncRNA upstream 58967 57692082 ~ 57692457 (-) True G1566716
TU1792434 lncRNA upstream 59796 57692911 ~ 57760375 (-) True G1566714
XM_021572559.2 mRNA downstream 3468 57599288 ~ 57628309 (-) True fam221a
XM_021572557.2 mRNA downstream 51314 57577413 ~ 57580463 (-) True LOC110496583
XM_036953340.1 mRNA downstream 63972 57496639 ~ 57567805 (-) True LOC110496865
XM_036953338.1 mRNA downstream 63973 57496639 ~ 57567804 (-) False LOC110496865
XR_005037516.1 mRNA upstream 19659 57652774 ~ 57656815 (-) True LOC118941192
XM_021572566.2 mRNA upstream 65999 57699114 ~ 57715622 (-) False LOC110496588
XM_021572564.2 mRNA upstream 65999 57699114 ~ 57715653 (-) False LOC110496588
XM_021572565.2 mRNA upstream 65999 57699114 ~ 57715653 (-) True LOC110496588
XM_036953351.1 mRNA upstream 133385 57766500 ~ 57800099 (-) False rftn1a
TU1790882 other downstream 894430 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1143488 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2966134 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2978927 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3736828 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 394396 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 442508 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 534269 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 777384 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1236248 58869363 ~ 58870007 (-) True G1567875

Expression Profile