RNA id: TU1791910


Basic Information

Item Value
RNA id TU1791910
length 263
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G1566281
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57999262 ~ 57999524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttgttgttgactaGCTGTGTGAGTCTGTCTGTACAGTGTTGTTGCAGAGTGTTGCTCTCCTGTTCATAGATGGCATCTCGTTCCATCTGGGCCAGACTCAGGAAGCGCCGGATCATACACAGGTTCTCCCACAGGGTTCGGTTCTCCGGGGACGGATCCTCCTTCCAGCGCAGCAGCTCACACAGCCAGCCCTGCAGAACACACCCACATCAGCACCCGGTCAGAGAACCCATAGAATAGAAATACAAACCTTCTCAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791905 lncRNA upstream 177 57998439 ~ 57999085 (+) True G1566279
TU1791904 lncRNA upstream 1796 57996975 ~ 57997466 (+) True G1566278
TU1791894 lncRNA upstream 17450 57981599 ~ 57981812 (+) True G1566269
TU1791892 lncRNA upstream 22889 57973404 ~ 57976373 (+) True G1566267
TU1791806 lncRNA upstream 114135 57821610 ~ 57885127 (+) True G1566194
TU1791908 lncRNA downstream 5676 58005200 ~ 58005835 (+) False G1566280
TU1791909 lncRNA downstream 5676 58005200 ~ 58005835 (+) True G1566280
TU1791911 lncRNA downstream 6489 58006013 ~ 58006590 (+) True G1566282
TU1791924 lncRNA downstream 31457 58030981 ~ 58031285 (+) True G1566295
TU1791925 lncRNA downstream 32103 58031627 ~ 58031854 (+) True G1566296
XM_021572575.2 mRNA upstream 63965 57893854 ~ 57935297 (+) False LOC110496592
XM_021572574.2 mRNA upstream 63965 57893855 ~ 57935297 (+) False LOC110496592
XM_021572577.2 mRNA upstream 63965 57906886 ~ 57935297 (+) False LOC110496592
XM_021572572.2 mRNA upstream 128901 57851179 ~ 57870361 (+) False LOC110496591
XM_036953380.1 mRNA upstream 238846 57745515 ~ 57760416 (+) True oxnad1
XM_036953387.1 mRNA downstream 65960 58065484 ~ 58140619 (+) True LOC110496868
XM_021572579.2 mRNA downstream 182953 58182477 ~ 58187784 (+) False LOC110496594
XM_036953385.1 mRNA downstream 182953 58182477 ~ 58187784 (+) False LOC110496594
XM_036953383.1 mRNA downstream 182954 58182478 ~ 58187784 (+) False LOC110496594
XM_036953382.1 mRNA downstream 182955 58182479 ~ 58187784 (+) False LOC110496594
TU1791846 other upstream 52499 57941097 ~ 57946763 (+) True G1566224
TU1791842 other upstream 78616 57916615 ~ 57920646 (+) True LOC110496592
TU1791820 other upstream 136216 57851221 ~ 57863046 (+) True LOC110496591
TU1791304 other upstream 887299 57109333 ~ 57111963 (+) False LOC110496571
TU1791300 other upstream 887422 57109333 ~ 57111840 (+) False LOC110496571
TU1792104 other downstream 364732 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 871375 58870899 ~ 58873690 (+) True LOC110496618
TU1793432 other downstream 957597 58957121 ~ 58958851 (+) True dlx5a
TU1793473 other downstream 1025456 59024980 ~ 59035335 (+) True sem1
TU1793654 other downstream 1310460 59309984 ~ 59312723 (+) True G1567716

Expression Profile