RNA id: TU1792637


Basic Information

Item Value
RNA id TU1792637
length 280
RNA type TUCP
GC content 0.48
exon number 1
gene id G1566899
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58027511 ~ 58027790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctacaatctatgcttgatgccctcaatctcacacaaattatcaatgaatcCACCAGGTACAACCTACAACCCCAAATcggtaaacacgggcaccctcatagatatcattctaaccaacctgccctccaaaaacacctctgctgttttcaaccaagatctcagcgatcactgcctcattgccttcatccgtaatgggtctgcggtcaaacgaccacccctcatcactgtcaaacgctccctaaaacacttcagtgagcaggcctttctaatcgacctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792631 lncRNA downstream 5887 58021416 ~ 58021624 (-) True G1566893
TU1792623 lncRNA downstream 28730 57998442 ~ 57998781 (-) True LOC110496867
TU1792622 lncRNA downstream 29481 57996927 ~ 57998030 (-) False LOC110496867
TU1792621 lncRNA downstream 32294 57994757 ~ 57995217 (-) True G1566883
TU1792618 lncRNA downstream 34864 57992375 ~ 57992647 (-) True G1566880
TU1792641 lncRNA upstream 2326 58030116 ~ 58030412 (-) True G1566903
TU1792644 lncRNA upstream 7031 58034821 ~ 58035090 (-) True G1566906
TU1792665 lncRNA upstream 46419 58074209 ~ 58078146 (-) False G1566923
TU1792702 lncRNA upstream 98892 58126682 ~ 58126884 (-) True G1566952
TU1792708 lncRNA upstream 112215 58140005 ~ 58140632 (-) True G1566957
XM_036953347.1 mRNA downstream 7880 57996927 ~ 58019631 (-) False LOC110496867
XM_036953348.1 mRNA downstream 61361 57939613 ~ 57966150 (-) False LOC110496593
XM_036953349.1 mRNA downstream 61361 57939613 ~ 57966150 (-) True LOC110496593
XM_021572952.2 mRNA downstream 179150 57838719 ~ 57848361 (-) True LOC110496952
NM_001246339.1 mRNA downstream 196345 57822733 ~ 57831166 (-) True dazl
XM_021572582.2 mRNA upstream 185439 58213229 ~ 58223672 (-) False sgo1
XM_021572583.2 mRNA upstream 185439 58213229 ~ 58223674 (-) False sgo1
XM_036953352.1 mRNA upstream 185439 58213229 ~ 58223674 (-) True sgo1
XM_036953371.1 mRNA upstream 210680 58238470 ~ 58295780 (-) False LOC110496870
XM_036953370.1 mRNA upstream 210680 58238470 ~ 58295781 (-) True LOC110496870
TU1790882 other downstream 1290164 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1539222 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 3361868 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 3374661 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 4132562 53889709 ~ 53894949 (-) True mrpl3
TU1792666 other upstream 47833 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 139594 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 382709 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 841573 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 843147 58870937 ~ 58873691 (-) False G1567871

Expression Profile