RNA id: TU1792665


Basic Information

Item Value
RNA id TU1792665
length 427
lncRNA type intronic
GC content 0.56
exon number 4
gene id G1566923
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58074209 ~ 58078146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacgggcaggagagatggtatgagagagggggagagaggaggaggcactGACAGGAGAGATagtatgagagagggggagagaggaggaggcactgacaggagagatggtatgagagagggggagagaggaggaggtatggacaggagcgatggtatgagagagggggagagaggaggaggtatggacaggagagatggtacgagagaggggagagaggaggaggtatggacaggagagatggtatgagagaggggagagaggaggaggtatggacaggagagatggtatgagagaaggggagagaggaggaggtatggacaggagagatggtatgagagagggggagagagaagcaggtacggacagaagagatggtatgagagaggggagagaggaggaggtacggACAGAagagatggtatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792644 lncRNA downstream 39119 58034821 ~ 58035090 (-) True G1566906
TU1792641 lncRNA downstream 43797 58030116 ~ 58030412 (-) True G1566903
TU1792631 lncRNA downstream 52585 58021416 ~ 58021624 (-) True G1566893
TU1792623 lncRNA downstream 75428 57998442 ~ 57998781 (-) True LOC110496867
TU1792622 lncRNA downstream 76179 57996927 ~ 57998030 (-) False LOC110496867
TU1792702 lncRNA upstream 48536 58126682 ~ 58126884 (-) True G1566952
TU1792708 lncRNA upstream 61859 58140005 ~ 58140632 (-) True G1566957
TU1792709 lncRNA upstream 67432 58145578 ~ 58146353 (-) True G1566958
TU1792711 lncRNA upstream 70586 58148732 ~ 58149003 (-) True G1566960
TU1792717 lncRNA upstream 82669 58160815 ~ 58161125 (-) True G1566966
XM_036953347.1 mRNA downstream 54578 57996927 ~ 58019631 (-) False LOC110496867
XM_036953348.1 mRNA downstream 108059 57939613 ~ 57966150 (-) False LOC110496593
XM_036953349.1 mRNA downstream 108059 57939613 ~ 57966150 (-) True LOC110496593
XM_021572952.2 mRNA downstream 225848 57838719 ~ 57848361 (-) True LOC110496952
NM_001246339.1 mRNA downstream 243043 57822733 ~ 57831166 (-) True dazl
XM_021572582.2 mRNA upstream 135083 58213229 ~ 58223672 (-) False sgo1
XM_021572583.2 mRNA upstream 135083 58213229 ~ 58223674 (-) False sgo1
XM_036953352.1 mRNA upstream 135083 58213229 ~ 58223674 (-) True sgo1
XM_036953371.1 mRNA upstream 160324 58238470 ~ 58295780 (-) False LOC110496870
XM_036953370.1 mRNA upstream 160324 58238470 ~ 58295781 (-) True LOC110496870
TU1792637 other downstream 46419 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1336862 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1585920 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 3408566 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 3421359 54638867 ~ 54652850 (-) True LOC110496860
TU1792723 other upstream 89238 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 332353 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 791217 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 792791 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 926699 59004845 ~ 59074648 (-) True G1567931

Expression Profile