RNA id: TU1792751


Basic Information

Item Value
RNA id TU1792751
length 1683
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1566997
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58210670 ~ 58212529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAATCGGTTATAACTACGGCATTAAAAGCAATAGTACAAAGGCCATGTAATAACTCTTCAAGACATATCACAAAATCCAGATTTATCCTATAGTTTAAAAAGTACAAACATCTTCATACAAAACAGAAAAACAAGATAGTACTGCACAATCTCTTTTCTTTTATCTTCAAAGTACAAAGGTAGCAATCTCCATTTGCTAGACAGAAATAATTAGGCAAAATAAATTAAGACCTTTTGTTAAGCATTATTCCTTTAAATTATAGTACATAAATAAGGATGAACTATACATAAATAAGCCATAGCGTGCATTTCCCTAAAAACACAAAACAGTTCGATGGAAAACAAAAATGTTGTTATTCACCATGTGGTGCTGAATAGTTGCTTGAAAAATAAATAAGGGCATTTCCATGGTCACCTTTTGCCTTATGGGACTTTTTACATGGACAAGCAAGACGGGTaacttatatacagtacattgaaaATATACATTCAATAATTCAAGAGGTTTAACCTCTTGAATTACTTAATGTATACATGTGGATTTGAAATATAATTTTCCTTTTTTTGGCAGGATGAACTCTAATAACATACATAGAAACTTTGACCTCATACATTCTGAGACACAGACCTCGCATGACGTCATGCGTACACTCACACGCGCGTTAGGTAACATACACATTAGAACTAATGACTGATTACTATGGCTCCTGAGGAGaggtttcccctaggtacagatcaaGGATCAGCTTCCCATCCCACAATCATAACGGTTACCATTAGtagggaaaatgctaaactgaccctaGGGGCAACTTCATCCTGCACCATTACGACCCAGTAACACCAATCTGGAGATTGACAGACTGAATGGCTGAGTAACTAACTGGCTGATTATCCCTTCCCGTTTCTCCCAGACAGTCCAGTTGTTTACAGATGTGACGTCTACATGTAGTAGGACTCTGAACAGATGTAGGGTTAGGTTAGCTGTACAGGTGGAGTTTCTGCATGTAGAAGGACTCTGAACAGATGTAGGGTTAGGTTAGCTGTACAGGTGGAGTTTCTGCATGTAGTAGGACTCTGAACAGATGTAGGGTTAGGTTAGCTGTACAGGTGGAGTTTCTGCATGTAGTAGGACTCTGAACAGATGTAGGGTTAGGTTAGCTGTACAGGTGGAGTTTCTACATGACATCTGTTTTCCTGAGTCAACAAAGACAAGGTGGAGCAAGGAGAAGCAGAGACTGATAAAACACAGTAAAAGACAGAGGAGGCAGTATGAcaaggatggagagaagagagtgatAGAACAGCAGACATTGAGTATTCCAATGAACCTAAAACCCTCCTCCCTACACCATATCCTACTGTTTTTCTAGTTGACAAGAGTAGAAAAATAAAGACTAAGACAATAAAAACCTTTTGAAAATCATTAGAACTAAACCACACTCTCCCTTTAAGCCCCTCCCATCTCCCTTGAAGCCCCTCCCATCCCTTCACTTCTCAATGAGGCCCGCCTCCTTGATCTTAGTGTAGAAGACCTTCTCTAGCAGGTTGGCACACTTGTAGTACTGGCTCTCTGGAGGGTTGTACTCTCGACAGTTGGTGAAGATGCGCTGCATGTCGGCCATGAAGAGCTTCCGCGTGGTGTAGTACCTGCTCTTCAGACGCTCAGACATCGTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792741 lncRNA downstream 11096 58193069 ~ 58199574 (-) True G1566987
TU1792717 lncRNA downstream 49545 58160815 ~ 58161125 (-) True G1566966
TU1792711 lncRNA downstream 61667 58148732 ~ 58149003 (-) True G1566960
TU1792709 lncRNA downstream 64317 58145578 ~ 58146353 (-) True G1566958
TU1792708 lncRNA downstream 70038 58140005 ~ 58140632 (-) True G1566957
TU1792849 lncRNA upstream 147002 58359531 ~ 58360223 (-) True G1567068
TU1793115 lncRNA upstream 254153 58466682 ~ 58467437 (-) True G1567288
TU1793162 lncRNA upstream 321234 58533763 ~ 58535909 (-) False G1567326
TU1793166 lncRNA upstream 323518 58536047 ~ 58536868 (-) True G1567326
TU1793176 lncRNA upstream 340776 58553305 ~ 58555382 (-) True G1567334
XM_036953347.1 mRNA downstream 191039 57996927 ~ 58019631 (-) False LOC110496867
XM_036953348.1 mRNA downstream 244520 57939613 ~ 57966150 (-) False LOC110496593
XM_036953349.1 mRNA downstream 244520 57939613 ~ 57966150 (-) True LOC110496593
XM_021572952.2 mRNA downstream 362309 57838719 ~ 57848361 (-) True LOC110496952
NM_001246339.1 mRNA downstream 379504 57822733 ~ 57831166 (-) True dazl
XM_021572582.2 mRNA upstream 700 58213229 ~ 58223672 (-) False sgo1
XM_021572583.2 mRNA upstream 700 58213229 ~ 58223674 (-) False sgo1
XM_036953352.1 mRNA upstream 700 58213229 ~ 58223674 (-) True sgo1
XM_036953371.1 mRNA upstream 25941 58238470 ~ 58295780 (-) False LOC110496870
XM_036953370.1 mRNA upstream 25941 58238470 ~ 58295781 (-) True LOC110496870
TU1792723 other downstream 42973 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 132524 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 182880 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1473323 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1722381 56481468 ~ 56488289 (-) True G1565122
TU1792861 other upstream 197970 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 656834 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 658408 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 792316 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 942499 59155028 ~ 59157044 (-) True G1568017

Expression Profile