RNA id: TU1792861


Basic Information

Item Value
RNA id TU1792861
length 425
RNA type TUCP
GC content 0.50
exon number 2
gene id G1567080
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58410499 ~ 58411129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtggttGGTGGTGATGGGTGTGTCTTTACTGTGCAGTTTGCTGTATAACTGTGCCTTTAgctggtgcacacacacacaccattaccaaCCGCCATCAGCAACCACCATCACCAACCACAATCCAcaacaaccatcaccaccaccatcaacaccatcaccactaccatcaaAACCATCACCACTATCATCCACACCATCACCaactaccatcaacaccatcaccaaccaccatcaccactaccatcaacaccaccaccaaccaccatcaacaccatcaccactaccatcaacaccatcaccactacactccacaactaccatcaacaccatcaccaatCACCatcaccaaccaccaccaccaaccaccatccacaaccaccatcaacaccatcaccactaccatcaacaccaccaccaaccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792849 lncRNA downstream 50276 58359531 ~ 58360223 (-) True G1567068
TU1792751 lncRNA downstream 197970 58210670 ~ 58212529 (-) False G1566997
TU1792752 lncRNA downstream 197970 58210670 ~ 58212529 (-) False G1566997
TU1792755 lncRNA downstream 197970 58210670 ~ 58212529 (-) False G1566997
TU1792756 lncRNA downstream 197970 58210670 ~ 58212529 (-) False G1566997
TU1793115 lncRNA upstream 55553 58466682 ~ 58467437 (-) True G1567288
TU1793162 lncRNA upstream 122634 58533763 ~ 58535909 (-) False G1567326
TU1793166 lncRNA upstream 124918 58536047 ~ 58536868 (-) True G1567326
TU1793176 lncRNA upstream 142176 58553305 ~ 58555382 (-) True G1567334
TU1793190 lncRNA upstream 166396 58577525 ~ 58577752 (-) True G1567348
XM_036953356.1 mRNA downstream 90979 58307374 ~ 58319520 (-) True LOC110496600
XM_021572584.2 mRNA downstream 103999 58302827 ~ 58306500 (-) True LOC110496599
XM_036953370.1 mRNA downstream 114718 58238470 ~ 58295781 (-) True LOC110496870
XM_036953371.1 mRNA downstream 114719 58238470 ~ 58295780 (-) False LOC110496870
XM_021572583.2 mRNA downstream 186825 58213229 ~ 58223674 (-) False sgo1
XM_021572588.2 mRNA upstream 32519 58443648 ~ 58573152 (-) True LOC110496602
XM_036953366.1 mRNA upstream 177966 58589095 ~ 58609245 (-) False LOC110496603
XM_036953365.1 mRNA upstream 177966 58589095 ~ 58609289 (-) False LOC110496603
XM_036953363.1 mRNA upstream 177966 58589095 ~ 58609297 (-) False LOC110496603
XM_036953368.1 mRNA upstream 177966 58589095 ~ 58609298 (-) False LOC110496603
TU1792723 other downstream 242802 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 332353 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 382709 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1673152 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1922210 56481468 ~ 56488289 (-) True G1565122
TU1793871 other upstream 458234 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 459808 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 593716 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 743899 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 1318050 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile