RNA id: TU1793212


Basic Information

Item Value
RNA id TU1793212
length 231
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1567355
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58583826 ~ 58584056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATCGTATTAAGACGAGTTGACTTTAAGTTAGATGGGTTCTGGATCATAATGTGCTCGGCGGTATTTATTTTCCTTGAGGTGTGGGAGATCTGTGAGGTGATGGAGCTCATTCTGTGGTTATCCAGAGCTCAGGCATCACAGTTACAAGGCAGAAGGTCAGGGGTCAATCCATGATTAACCAACCAGGATTCAGTATGTAGCAGTCTAGTATGGACATAATGTAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793190 lncRNA downstream 6074 58577525 ~ 58577752 (-) True G1567348
TU1793176 lncRNA downstream 28444 58553305 ~ 58555382 (-) True G1567334
TU1793166 lncRNA downstream 46958 58536047 ~ 58536868 (-) True G1567326
TU1793162 lncRNA downstream 47917 58533763 ~ 58535909 (-) False G1567326
TU1793115 lncRNA downstream 116389 58466682 ~ 58467437 (-) True G1567288
TU1793210 lncRNA upstream 4304 58588360 ~ 58588982 (-) True G1567353
TU1793225 lncRNA upstream 78557 58662613 ~ 58662887 (-) True G1567368
TU1793237 lncRNA upstream 109916 58693972 ~ 58694822 (-) True G1567380
TU1793296 lncRNA upstream 155709 58739765 ~ 58742842 (-) True LOC110496609
TU1793856 lncRNA upstream 238123 58822179 ~ 58822505 (-) True G1567865
XM_021572588.2 mRNA downstream 10674 58443648 ~ 58573152 (-) True LOC110496602
XM_036953358.1 mRNA downstream 170891 58349527 ~ 58412935 (-) True LOC110496601
XM_036953359.1 mRNA downstream 171159 58349527 ~ 58412667 (-) False LOC110496601
XM_036953357.1 mRNA downstream 171181 58349527 ~ 58412645 (-) False LOC110496601
XM_036953356.1 mRNA downstream 264306 58307374 ~ 58319520 (-) True LOC110496600
XM_036953366.1 mRNA upstream 5039 58589095 ~ 58609245 (-) False LOC110496603
XM_036953365.1 mRNA upstream 5039 58589095 ~ 58609289 (-) False LOC110496603
XM_036953363.1 mRNA upstream 5039 58589095 ~ 58609297 (-) False LOC110496603
XM_036953368.1 mRNA upstream 5039 58589095 ~ 58609298 (-) False LOC110496603
XM_021572592.2 mRNA upstream 5039 58589095 ~ 58609657 (-) False LOC110496603
TU1792861 other downstream 172697 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 416129 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 505680 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 556036 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1846479 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 285307 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 286881 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 420789 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 570972 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 1145123 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile