RNA id: TU1793237


Basic Information

Item Value
RNA id TU1793237
length 671
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1567380
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58693972 ~ 58694822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttacatatcactgcacctgtacatagatagcccatctgtaaacagcccatctaactacctcaaccccatactgtatttatttatcttgctcctttgcaccccagtatctctacttgcacattcatcttctgccgatctaccattccagtgtttaattgctatattgtaattacttcgtcaccatggcctatttatttccttaacttacctcatttgcgctcactgtatatagactttttgttctactgtattattaactgtttgttttgtttattccatgtgtaactgttgtacagtggggcaaaaaagtatttagtcagccaccaattgtgctagttctcccacttaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacacaatgagaaaaaaaaaatccagaaaatcacattgtaggatttttaatgaattaatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctgacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793225 lncRNA downstream 31085 58662613 ~ 58662887 (-) True G1567368
TU1793210 lncRNA downstream 104990 58588360 ~ 58588982 (-) True G1567353
TU1793212 lncRNA downstream 109916 58583826 ~ 58584056 (-) True G1567355
TU1793190 lncRNA downstream 116220 58577525 ~ 58577752 (-) True G1567348
TU1793176 lncRNA downstream 138590 58553305 ~ 58555382 (-) True G1567334
TU1793296 lncRNA upstream 44943 58739765 ~ 58742842 (-) True LOC110496609
TU1793856 lncRNA upstream 127357 58822179 ~ 58822505 (-) True G1567865
TU1793863 lncRNA upstream 177034 58871856 ~ 58872355 (-) True G1567871
TU1793878 lncRNA upstream 191086 58885908 ~ 58892166 (-) True G1567880
TU1793885 lncRNA upstream 216667 58911489 ~ 58911850 (-) True G1567886
XM_036953374.1 mRNA downstream 2826 58676217 ~ 58691146 (-) False LOC110496608
XM_021572597.2 mRNA downstream 32506 58641033 ~ 58661466 (-) False LOC110496605
XM_036953376.1 mRNA downstream 32508 58644313 ~ 58661464 (-) True LOC110496605
XM_021572596.2 mRNA downstream 32510 58644302 ~ 58661462 (-) False LOC110496605
XM_021572594.2 mRNA downstream 53160 58629316 ~ 58640812 (-) False si:ch211-13c6.2
XM_021572598.2 mRNA upstream 13424 58708246 ~ 58723747 (-) False LOC110496607
XM_036953354.1 mRNA upstream 13424 58708246 ~ 58723747 (-) False LOC110496607
XM_036953355.1 mRNA upstream 13898 58708720 ~ 58723758 (-) True LOC110496607
XM_021572607.2 mRNA upstream 30641 58725463 ~ 58737268 (-) True LOC110496611
XM_021572603.2 mRNA upstream 45517 58740339 ~ 58789013 (-) False LOC110496609
TU1792861 other downstream 282843 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 526275 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 615826 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 666182 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1956625 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 174541 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 176115 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 310023 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 460206 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 1034357 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile