RNA id: TU1794038


Basic Information

Item Value
RNA id TU1794038
length 1970
RNA type TUCP
GC content 0.42
exon number 2
gene id G1568017
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59155028 ~ 59157044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTGTTCCAGAAAGCTGGATAAATACATTAGCCAGCTAACTGTCCAACATTGCTTAAAATAATGAGATATTTTGAGAAATATAGACTTAGGGCTCTGTTCAGTCTGTAttgctgaagcgttacagattgtgtactagaaatgtaaaggtaatttgtGATAGGGCCGACATACGCAGCGTTTACGGTGAATGCAGTCGCTGTGACCACAAGAACATTGCCTTTAATTGTCAATTACGCTTTAAAGCTGAACTGTGAtatggattgaatagagcccttcaAATTGACAAGATATAATTGACTCGGCAACAACAACCAGAATACAAATGAAAATAATATGTGGTTGTTTATCAAAGTTAACTGGATAATTTCATAATCCTGCTTTCTGGAATACCCCacatctctctactctctccccctgctctgtTGTACCCTGATGATTCTTTAAACAGAAAATTATACAACACACAGCCCAGTTTGATGTGACTGAGACAACTAAGGATAACAGACAGTCACTACAATACCATAGTAGGTGTAGTGGTAATACCTTGTGCAAGTGGTGGTAATAGTAAACAGTATATTACCTTCAAGCGTTTTGGTTGGTCAATCTTTTATGTTTTCTCACAAATGAAGTTCAAGATCAAGATTATTAGTTTCTTCTCAGTATCCAAAAAGCGACTTGGTGAACTGTATCGATATGTAAATGTGTCTCTCTGTTCCGttctcatatgtacagtagaaCCGTCATTCGGATGTGTCTCTGTTCCGttctcatatgtacagtagaaCCGTCATTCAGATGTGTCTGTTCCGttctcatatgtacagtagaaCCGTCATTCAGATGTGTCTGTTCCGttctcatatgtacagtagaaCCGTCATTCATATGTACAGTAGAACCGTCATTCATATGTACAGTAGAACCGTCATTCATATGTACAGTAGAACCGTCATTTGGATGTGCGTACTTGTGCTACTATCCCCATCCTGCGGATAGGGCTCATTCTGTTTGGTATCTATCAGACTCTCAGGTGGAAGACAGTAAAAGCACCATCATATAAAGTGATGGTTAGACCAAGATTCAATCAAAGGCACGTTGTAGACGAGCACATTGAACTGTCAAGTGTATTTTAAAGAGATGGCCTTCATGGTAAATACGGTACATGTCGGCTCAAGTGTAAATGACCTTTAAAAGCAAGTGCAATGCACATGTTGACAATGCACATGTTGACAATGCACATGTTGACAATGCACATGTTGACAGTGCACATGTTGACAATGCACATGTTGACAATGCACATGTTGACAATGCACTTTTGAATGAGTCCCGGCCTTAGTGATGATGTAATGAAAGAAAGCAGTCCAGGTCTAATTCAAGTCATGGCCAGCCCCTCCACTACTGTGCATATTACTGTATGAAAAGACAAACTGGAACACTACTCTAGACACACATTGTCAGTACTGTAGATATCACTTGATCTTCACAATAAGACTGACTCAAAAAGTAATCTTTACGGGTAGCTAAGACTAAAACAGAAGCTAAAACAACGTTTTTGTGTTTCTAGACCATGATGTAGAAAGGTACATTTCTGAAGATCATAATAGCTTTAAAAAATTCTCATCAACTAAAACAGACACATATTTATCTTTAAAGCCTAGAGAGGCAGATCATACTACTCACAATGTGCTTCTCTTTCGGGTGGAATATTCCAAGTGCTCGACTAGctgggggtgggagggagagggtgtaATGATTGCACGTGTGCTATTCTGCCCCCTATGTGTGGGCAGAGGGGGTTCAATTCAAGGGGCGTCCTTCTTGGACCGGGGGGTTACGTGAACGTTGTATCTTGGGAGGTGGAGTCCAAATTTGCTCTCGGTGCCAGCGAACGTGGCCACGGCCAACCTGAAACCTCCAATGTGGTCGGGGCTGGGCGCCGGCAGGCTGATGCGAGACTTGGGAGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793992 lncRNA downstream 64329 59090009 ~ 59090699 (-) True G1567979
TU1793957 lncRNA downstream 119690 59025022 ~ 59035338 (-) True G1567944
TU1793923 lncRNA downstream 176554 58978260 ~ 58978474 (-) True G1567913
TU1793891 lncRNA downstream 222387 58927864 ~ 58932641 (-) False G1567889
TU1793892 lncRNA downstream 222446 58927864 ~ 58932582 (-) False G1567889
TU1794047 lncRNA upstream 10903 59167947 ~ 59168189 (-) True G1568021
TU1794053 lncRNA upstream 23054 59180098 ~ 59180748 (-) True G1568027
TU1794066 lncRNA upstream 37855 59194899 ~ 59273220 (-) True G1568035
TU1794163 lncRNA upstream 212531 59369575 ~ 59371107 (-) True G1568121
TU1794165 lncRNA upstream 213553 59370597 ~ 59374480 (-) True G1568122
LOC110496627 mRNA downstream 94117 59060343 ~ 59060911 (-) True LOC110496627
XM_021572631.2 mRNA downstream 188897 58962944 ~ 58966131 (-) True dlx6a
XM_021572626.2 mRNA downstream 202536 58934268 ~ 58952492 (-) False ago2
XM_036951073.1 mRNA upstream 6530 59163574 ~ 59281264 (-) True LOC118940999
XM_036953399.1 mRNA upstream 137193 59294237 ~ 59320224 (-) False asb4
XM_036953400.1 mRNA upstream 137193 59294237 ~ 59320224 (-) False asb4
XM_036953397.1 mRNA upstream 151320 59308364 ~ 59320224 (-) True asb4
XM_036953401.1 mRNA upstream 165580 59322624 ~ 59438072 (-) False ppp1r9a
TU1793943 other downstream 80380 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 281337 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 285021 58869363 ~ 58870007 (-) True G1567875
TU1792861 other downstream 743899 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 987331 58167384 ~ 58167697 (-) True G1566972
TU1794475 other upstream 572135 59729179 ~ 59736780 (-) True LOC110496637
TU1795401 other upstream 1084887 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 1191732 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 1222809 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 1453443 60610487 ~ 60616016 (-) False LOC110496651

Expression Profile