RNA id: TU1794047


Basic Information

Item Value
RNA id TU1794047
length 243
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1568021
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59167947 ~ 59168189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATGTTTCAGGGTTGCTTATTTGTTCTATTCTAATAAGGGGGGCtattggcccaattctgctctacattAGTTATTTGGTGGTTTTCTTTGCACTtcaaaactctgcatgcagtattttgattggatgtttgtcccatttggtaaattcattaTTAGAGAGGGGACCCCATACTTCGCTGCCATTTTGTGCCAGATTGTAATTGCAATTTCCGTTTTAATGTTGCTTCTAATGacatagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793992 lncRNA downstream 77248 59090009 ~ 59090699 (-) True G1567979
TU1793957 lncRNA downstream 132609 59025022 ~ 59035338 (-) True G1567944
TU1793923 lncRNA downstream 189473 58978260 ~ 58978474 (-) True G1567913
TU1793891 lncRNA downstream 235306 58927864 ~ 58932641 (-) False G1567889
TU1794053 lncRNA upstream 11909 59180098 ~ 59180748 (-) True G1568027
TU1794066 lncRNA upstream 26710 59194899 ~ 59273220 (-) True G1568035
TU1794163 lncRNA upstream 201386 59369575 ~ 59371107 (-) True G1568121
TU1794165 lncRNA upstream 202408 59370597 ~ 59374480 (-) True G1568122
TU1794179 lncRNA upstream 231864 59400053 ~ 59400923 (-) True G1568136
LOC110496627 mRNA downstream 107036 59060343 ~ 59060911 (-) True LOC110496627
XM_021572631.2 mRNA downstream 201816 58962944 ~ 58966131 (-) True dlx6a
XM_021572627.2 mRNA downstream 215455 58934268 ~ 58952492 (-) False ago2
XM_036953399.1 mRNA upstream 126048 59294237 ~ 59320224 (-) False asb4
XM_036953400.1 mRNA upstream 126048 59294237 ~ 59320224 (-) False asb4
XM_036953397.1 mRNA upstream 140175 59308364 ~ 59320224 (-) True asb4
XM_036953401.1 mRNA upstream 154435 59322624 ~ 59438072 (-) False ppp1r9a
XM_036953403.1 mRNA upstream 154435 59322624 ~ 59438072 (-) False ppp1r9a
TU1794038 other downstream 10903 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 93299 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 294256 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 297940 58869363 ~ 58870007 (-) True G1567875
TU1792861 other downstream 756818 58410499 ~ 58411129 (-) True G1567080
TU1794475 other upstream 560990 59729179 ~ 59736780 (-) True LOC110496637
TU1795401 other upstream 1073742 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 1180587 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 1211664 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 1442298 60610487 ~ 60616016 (-) False LOC110496651

Expression Profile