RNA id: TU1794647


Basic Information

Item Value
RNA id TU1794647
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1568552
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59893230 ~ 59893462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagtcatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttatgtttcgagctgttttgcaaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1794646 lncRNA downstream 710 59892021 ~ 59892520 (-) True G1568551
TU1794628 lncRNA downstream 11559 59881450 ~ 59881671 (-) True G1568534
TU1794612 lncRNA downstream 23121 59869794 ~ 59870109 (-) True G1568524
TU1794605 lncRNA downstream 28994 59863938 ~ 59864236 (-) True G1568517
TU1794593 lncRNA downstream 39995 59853010 ~ 59853235 (-) True G1568505
TU1794648 lncRNA upstream 126 59893588 ~ 59893838 (-) True G1568553
TU1794660 lncRNA upstream 8231 59901693 ~ 59901973 (-) True G1568565
TU1794851 lncRNA upstream 13498 59906960 ~ 59907301 (-) False LOC110496642
TU1794850 lncRNA upstream 14012 59907474 ~ 59907769 (-) True LOC110496642
TU1794906 lncRNA upstream 64032 59957494 ~ 59957784 (-) True G1568767
XR_005037526.1 mRNA downstream 154637 59719440 ~ 59738593 (-) False LOC110496637
XM_021572653.2 mRNA downstream 154641 59737270 ~ 59738589 (-) False LOC110496637
XM_036953414.1 mRNA downstream 156417 59723043 ~ 59736813 (-) False LOC110496637
XM_036953415.1 mRNA downstream 156418 59721805 ~ 59736812 (-) False LOC110496637
XM_036953417.1 mRNA downstream 156419 59712624 ~ 59736811 (-) False LOC110496637
XM_036953419.1 mRNA upstream 13444 59906906 ~ 59932090 (-) False LOC110496642
LOC110496641 mRNA upstream 125172 60018634 ~ 60200542 (-) False LOC110496641
XM_036953421.1 mRNA upstream 308486 60201948 ~ 60254722 (-) False LOC110496644
XM_036953420.1 mRNA upstream 308486 60201948 ~ 60254724 (-) True LOC110496644
XR_002469584.2 mRNA upstream 479056 60372518 ~ 60374869 (-) False LOC110496648
TU1794475 other downstream 156450 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 736186 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 818582 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 1019539 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 1023223 58869363 ~ 58870007 (-) True G1567875
TU1795401 other upstream 348469 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 455314 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 486391 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 717025 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 718330 60611792 ~ 60616292 (-) False LOC110496651

Expression Profile