RNA id: TU1795041



Basic Information


Item Value
RNA id TU1795041
length 426
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1568892
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60175909 ~ 60176334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttctgggctctggctggtgTTCAtcaagatctctctgtactttgctccgttcatctttacctcaatcctgactagtctcccagtccctgccactgaaaaacatccccacagcatgatgctgccgccaccatgcttcaccgtagggatagtgccaggtttcctccagacgtgacgcttggcattcaggccaaagagttcaatcttggtttcgtcagtccagataatcttgtttttcatggtctgagtcctttaggtgccttttggcaaactccaattgggctgtcatctgccttttactaaggagtggcttccgtctggccactctaccataaaggcctgattggtggagtgctgcagagatggttgttcttttggaaggttctcccatctccacagaggaactctggagtaaTGCCAGAGTGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1795040 lncRNA downstream 658 60175040 ~ 60175251 (-) True G1568891
TU1795036 lncRNA downstream 4373 60171244 ~ 60171536 (-) False LOC110496641
TU1795033 lncRNA downstream 6715 60168937 ~ 60169194 (-) True G1568884
TU1795029 lncRNA downstream 8243 60167459 ~ 60167666 (-) True G1568880
TU1794943 lncRNA downstream 144785 60030389 ~ 60031124 (-) True G1568799
TU1795046 lncRNA upstream 3404 60179738 ~ 60179969 (-) True G1568897
TU1795047 lncRNA upstream 5694 60182028 ~ 60182291 (-) True G1568898
TU1795060 lncRNA upstream 20115 60196449 ~ 60196649 (-) True G1568911
TU1795064 lncRNA upstream 20955 60197289 ~ 60200664 (-) True LOC110496641
TU1795376 lncRNA upstream 35282 60211616 ~ 60213581 (-) True G1569175
XM_036953419.1 mRNA downstream 243819 59906906 ~ 59932090 (-) False LOC110496642
XM_021572653.2 mRNA downstream 437320 59737270 ~ 59738589 (-) False LOC110496637
XM_036953414.1 mRNA downstream 439096 59723043 ~ 59736813 (-) False LOC110496637
XM_036953415.1 mRNA downstream 439097 59721805 ~ 59736812 (-) False LOC110496637
XM_036953416.1 mRNA downstream 439098 59721805 ~ 59736811 (-) False LOC110496637
XM_036953421.1 mRNA upstream 25614 60201948 ~ 60254722 (-) False LOC110496644
XM_036953420.1 mRNA upstream 25614 60201948 ~ 60254724 (-) True LOC110496644
XR_002469584.2 mRNA upstream 196184 60372518 ~ 60374869 (-) False LOC110496648
XR_002469583.2 mRNA upstream 196184 60372518 ~ 60374871 (-) False LOC110496648
XR_002469585.2 mRNA upstream 196184 60372518 ~ 60374871 (-) False LOC110496648
TU1794475 other downstream 439129 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1018865 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 1101261 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 1302218 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 1305902 58869363 ~ 58870007 (-) True G1567875
TU1795401 other upstream 65597 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 172442 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 203519 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 434153 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 435458 60611792 ~ 60616292 (-) False LOC110496651

Expression Profile