RNA id: TU1795376


Basic Information

Item Value
RNA id TU1795376
length 904
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1569175
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60211616 ~ 60213581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccctcctctataatactctctctcaccccttccttccctcctctataaTACTCTCTCTTACCCCTTCCTTACCTCCTCTATaatactctctctcaccccttccttctctcctctataATACTCTCTCTCACCGCTTCCTTCCTCTATaatactctctctcaccccttccttccctcctctataactctctcaccccttccctcctctataacactctctcaccccttccttacctcctctataatactctctctcaccccttccttctctcctctataatactctctcaccccttccttacctcctctataatactctctcaccccttccttcctctataatactctctcaccccttccttccctcctctataatactctctcactccttccttgctctataatactctctctcaccccttccttctctcctctataATACTCTCTCTCACCGCTTCCTTCCTCTATaatactctctctcaccccttccttccctcctctataactctctcaccccttccctcctctataatactctctctcaccccttccttctctcctctataatactctctctcaccccttccttctctcctctataatactctctctcaccccttccttctctcctctataatactctctctcaccccttccttaCCTCTTCTATAatactctctcaccccttccttccgctataatactctctctcaccccttccttctctcctctacaatactctctctcaccccttccttctctcctctataatactctctcaccccttccttccctcctctataatactctctctcaccacttccttctctcctctataatactctctcaccccttccttccctcctctataatactctctcaccccttccttctctcctctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795064 lncRNA downstream 10952 60197289 ~ 60200664 (-) True LOC110496641
TU1795060 lncRNA downstream 14967 60196449 ~ 60196649 (-) True G1568911
TU1795047 lncRNA downstream 29325 60182028 ~ 60182291 (-) True G1568898
TU1795046 lncRNA downstream 31647 60179738 ~ 60179969 (-) True G1568897
TU1795041 lncRNA downstream 35282 60175909 ~ 60176334 (-) True G1568892
TU1795414 lncRNA upstream 57477 60271058 ~ 60271283 (-) True G1569209
TU1795416 lncRNA upstream 59663 60273244 ~ 60273456 (-) True G1569211
TU1795417 lncRNA upstream 60545 60274126 ~ 60274361 (-) True G1569212
TU1795419 lncRNA upstream 61608 60275189 ~ 60275393 (-) True G1569214
TU1795420 lncRNA upstream 61866 60275447 ~ 60275684 (-) True G1569215
LOC110496641 mRNA downstream 11074 60018634 ~ 60200542 (-) False LOC110496641
XM_036953419.1 mRNA downstream 279526 59906906 ~ 59932090 (-) False LOC110496642
XM_021572653.2 mRNA downstream 473027 59737270 ~ 59738589 (-) False LOC110496637
XM_036953414.1 mRNA downstream 474803 59723043 ~ 59736813 (-) False LOC110496637
XM_036953415.1 mRNA downstream 474804 59721805 ~ 59736812 (-) False LOC110496637
XR_002469584.2 mRNA upstream 158937 60372518 ~ 60374869 (-) False LOC110496648
XR_002469583.2 mRNA upstream 158937 60372518 ~ 60374871 (-) False LOC110496648
XR_002469585.2 mRNA upstream 158937 60372518 ~ 60374871 (-) False LOC110496648
XM_036953434.1 mRNA upstream 211468 60425049 ~ 60470121 (-) False LOC110496650
XM_036953430.1 mRNA upstream 211468 60425049 ~ 60568860 (-) False LOC110496650
TU1794475 other downstream 474836 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1054572 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 1136968 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 1337925 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 1341609 58869363 ~ 58870007 (-) True G1567875
TU1795401 other upstream 28350 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 135195 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 166272 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 396906 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 398211 60611792 ~ 60616292 (-) False LOC110496651

Expression Profile