RNA id: TU1795466


Basic Information

Item Value
RNA id TU1795466
length 1894
RNA type TUCP
GC content 0.40
exon number 2
gene id G1569258
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60348776 ~ 60350759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcatgTATTAGATTAAACCATATGCGCCCCGACACTGAAAAACAAGTAAGATAtcaaacatactgtatcatagcaAACGTGTAGTTGGATTCACACGGTCAGGAATTCTGTAATATGATTATAGAAGCACAATCATGTTGTAGCATTAACATCATCCAATGAAACAGTTGATCAATTAACATCATCCAATTAAACAGTTGATCCATTAACATCATCCAATGAGACAGTTGATCAATCAACATCATCCAATGAAACAGTTGAGCCATTAACATCATCCAATGAAACAGTTGATCCAGTAACATCATCCAATGAGACAGTTGATCAATCAACATCATCTAATGAAACAGTTGAGCCATTAACATCATCCAATGAAACAGTTGATCCATTAACATCATCCAATGAGACAGCTGATCAATCAACATCATCCAATGAAACAGTTGATGCAGTCTAATCATGAATGTGCAAAGTGTGTCAGAATGATTTCTGATTTGATTTCTAATAAGATCCTGAGTGTATTTGTGTGCTAGCAGCACTAGATATACCAGAGGGAAAGTTATGGTCTAGATGTATTGCTGTGCAGTAAGAAGTTTTACAAACAAACTATTTTCCTTGACTAGTTCCAATCCCACAGAGGGAGCAACTCTGAAAGCACTCTAGCTAGTCATATTGAATCAAAGTGAGCATAATACGTAGGGTATTAAAACAACCATTCTTAACACAGGACAGCTGTGTGTTTCAACATGAACCCCTATCTGTTTCTATGTAACCCTTACAGACTCAGTCTAAATGAAGCAGGTACAATGTTGAACCTCCTCTGAATCCGACGTATCACTCTGCCGTTTCTCTCTAAAAAATCTCCCAACGAAGAACATTTCACTGACCCACACCTGCACTGACCTTACTACTATCCTGCTACACATGTCAGTATGCTGGATATGCAAGTAAAACCAGCAGTCACGACTACTGACAGTATTAGTGCAGTATCTAGCTCTATAAAATTCTACATGCCTCACATTGTCAAACCTTTCCTCCCTTGGATATTACCTTGTATTCTTTCTAGATCTTACCAGAGATTTACATTTAAATCCCCACATGTTGTTAAAGTCCAATAAAATTAAGACAAAATAGAAAATAAGACATCAACTGTCAATAACTTTAAAATTAAGTTAGGAAATACAGAATCATGCTTTTATGCCAAATGTAATTGCGCTGAATAGTGCGTACGTCGACCTTATTCTCATTCAACAGTCACTTTACTATGCCCTGTGCATCAGGTCATACATAGAGTCTCGAATGGAGTCAATCAGATTTCATTACAGTTTATGACACTGAAGTACGGATGCCATAAGAGGTACTCAAAGTGACATATTTTCAGTCTTTCCTGTTCGCACCAGTCAAAGTCTTATAAGATGAAGCCCATCAGAAATCCTGCTCTGGCCTGCAGTAACACAGGACAACCTGTAGGTGGCAGTGATATCAAAACACACGTGTTTGTTTGGACCAGAAGTAGCACTAGGCAGTGTGTGAGGTCCTCCTGCATTggattaaaatgtgtgtgtgcgtgtgtaatcTCTCTCGGTTGTTGTGAAGGTGAGCTCCAGGTGAGGTCCATGCCGACCTACCCTTGCTGCTTGGTGTTCCCCCACCGAGGAGCCTCTTCTCAAGCtaaggaaggagagacaagaggcAGCAGCTCCTGGACATCCAGAGGTTCTCTCCTGGTGGCAGTACATCTCAGCTTCAGGGGTCCTTGCATtgtttaaacttttttttataaAAGTATcctaaaaagcagcattcaaaTTGGTAAATTGTGGAAGACAGCACGGTTGCCTTTTGGAATCAAATGTCTCTGTTTAttgctctctttctcagtctttgtgtccatccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795374 lncRNA downstream 66196 60281305 ~ 60282580 (-) True G1569173
TU1795420 lncRNA downstream 73092 60275447 ~ 60275684 (-) True G1569215
TU1795419 lncRNA downstream 73383 60275189 ~ 60275393 (-) True G1569214
TU1795417 lncRNA downstream 74415 60274126 ~ 60274361 (-) True G1569212
TU1795416 lncRNA downstream 75320 60273244 ~ 60273456 (-) True G1569211
TU1795485 lncRNA upstream 21951 60372710 ~ 60374832 (-) False LOC110496648
TU1795486 lncRNA upstream 21951 60372710 ~ 60374832 (-) True LOC110496648
TU1795491 lncRNA upstream 26216 60376975 ~ 60383390 (-) True G1569273
TU1795492 lncRNA upstream 27230 60377989 ~ 60384352 (-) True G1569274
TU1795495 lncRNA upstream 28155 60378914 ~ 60387859 (-) False G1569276
XM_036953420.1 mRNA downstream 94052 60201948 ~ 60254724 (-) True LOC110496644
XM_036953421.1 mRNA downstream 94054 60201948 ~ 60254722 (-) False LOC110496644
LOC110496641 mRNA downstream 148234 60018634 ~ 60200542 (-) False LOC110496641
XM_036953419.1 mRNA downstream 416686 59906906 ~ 59932090 (-) False LOC110496642
XM_021572653.2 mRNA downstream 610187 59737270 ~ 59738589 (-) False LOC110496637
XR_002469584.2 mRNA upstream 21759 60372518 ~ 60374869 (-) False LOC110496648
XR_002469583.2 mRNA upstream 21759 60372518 ~ 60374871 (-) False LOC110496648
XR_002469585.2 mRNA upstream 21759 60372518 ~ 60374871 (-) False LOC110496648
XM_036953434.1 mRNA upstream 74290 60425049 ~ 60470121 (-) False LOC110496650
XM_036953430.1 mRNA upstream 74290 60425049 ~ 60568860 (-) False LOC110496650
TU1795401 other downstream 97407 60241931 ~ 60251369 (-) True G1569198
TU1794475 other downstream 611996 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1191732 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 1274128 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 1475085 58870937 ~ 58873691 (-) False G1567871
TU1795498 other upstream 29094 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 259728 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 261033 60611792 ~ 60616292 (-) False LOC110496651
TU1795650 other upstream 261033 60611792 ~ 60612891 (-) False LOC110496651
TU1795655 other upstream 261406 60612165 ~ 60616016 (-) True LOC110496651

Expression Profile