RNA id: TCONS_00004639


Basic Information

Item Value
RNA id TCONS_00004639
length 574
RNA type processed_transcript
GC content 0.57
exon number 4
gene id XLOC_002475
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 62369 ~ 76367 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGTGAGAGACGCTGATAAATGACGACTTAATGATCTGCAGAGTTCCGCTCGCCGCACACGCTCACATTTACAAACATCACATCCGTCAGGGCGGCTCGAGATCCTCCTGATGCCGCCGTGTTTGCTGGATGGGTGCTGCTGAAGCGCTCAGCTGTTGTCTAGACGCCCGTAGTGTCAAATCATTGGTCGGTGTGTTCGCTGGGGCTACAGGAGGAGAGACCTCAGCATGCAAACCCTCCTCTGTCCGGCTGGCCCCCTCGTTTTCTTTCCACTCGGCTGGTGTGCAGATGGATGCGCAGACGCCCCATTCTCACCCGCCGTTCAGTGATGCTCACCCACAGGGCGCCGCTGACCAATCCGCTGCTGCGCTGCCCTACAACCCGCAGGCCCCGCAGCCCAGCGCCACCCAGgtaaCTGCTGATATGGTGATGCTGCAGAGGCGGATGCCTCAGTGTTTCCGGGATCCAGCGACGGCACCCTTAAGAAAACTCTCCATCGAGCTGAtcaaaacatacaaacacatcAATGAGGTTTACTATGCAAAAAAGAAGCGTCGTCACCAACAGGGTCA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0001525 angiogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016310 phosphorylation biological_process
GO:0007420 brain development biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004712 protein serine/threonine/tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050302-29 Predicted to enable protein serine/threonine kinase activity and transcription coactivator activity. Acts upstream of or within angiogenesis and brain development. Predicted to be active in nucleus. Is expressed in endothelial cell; heart; nervous system; and pharyngeal arch. Used to study autism spectrum disorder. Human ortholog(s) of this gene implicated in Down syndrome; autism spectrum disorder; autosomal dominant non-syndromic intellectual disability 7; and intellectual disability. Orthologous to human DYRK1A (dual specificity tyrosine phosphorylation regulated kinase 1A).

Ensembl:

ensembl_id ENSDART00000147674

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005737 lncRNA downstream 20459 48851 ~ 51974 (-) True XLOC_002473
TCONS_00004633 lncRNA downstream 26947 32901 ~ 45486 (-) False XLOC_002472
TCONS_00005735 lncRNA downstream 27090 38581 ~ 45343 (-) False XLOC_002472
TCONS_00005736 lncRNA downstream 27090 38709 ~ 45343 (-) True XLOC_002472
TCONS_00005954 lncRNA downstream 29590 38107 ~ 42843 (-) False XLOC_002472
TCONS_00004643 lncRNA upstream 11130 85520 ~ 86348 (-) False XLOC_002476
TCONS_00005955 lncRNA upstream 93019 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 93019 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 93019 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005958 lncRNA upstream 105473 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004634 mRNA downstream 15163 53587 ~ 57270 (-) True XLOC_002474
TCONS_00004641 mRNA upstream 7507 81897 ~ 94184 (-) False XLOC_002476
TCONS_00004642 mRNA upstream 7913 82303 ~ 108952 (-) False XLOC_002476
TCONS_00004644 mRNA upstream 24981 99371 ~ 105100 (-) True XLOC_002476
TCONS_00004645 mRNA upstream 41725 116115 ~ 120580 (-) True XLOC_002477
TCONS_00004646 mRNA upstream 50605 124995 ~ 135432 (-) True XLOC_002478
TCONS_00004658 other upstream 265522 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2792330 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2794088 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3432150 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3694261 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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