RNA id: TU1795726


Basic Information

Item Value
RNA id TU1795726
length 1333
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1569467
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60740239 ~ 60741809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcagcaggggatcaaatactttttcccctcactgtaagTGTTTCAAGTCTTGTTCGAATAGCCCAATTTCAACCTACTTTGAACAGTCTCCAAACAGAGAGACGGACACTGGTGAgtagaacacatacagtatcctAGCATGACAGGGTCCTCTTAACTCCCTTTCACATAAACAACAAGATGGGGCTTGTATAGTTAAGTCTCATATAATAGAAAGCTTTGGGACTTATTCAGCTATCTCAAAGGGTTATCTTTGAATTACAAAACCCCAGATTAACCACACATAGAAAAGAGTAATCATTCAGACCTCTAAATGAATCGTTTTAATGTACTAAACTTTTTTATCTTATTTTAAGGACAACACAATTCAGTTATTTGTTGTGGTCTACATGTAAAAAAAAGCAACAGTCCTGTTCAAATCTATGCCGATCCCACTGAATTCAAAAACAAAACTCCCATGATGCCTGCCATTGATCCTCTTTGAAACCAGTCTTTTAGATCTGACACCACTAGACAATCCTGGAATGTTCCTTCAAGCTTTCTTATTGTTTTTAAGCTCCCATAGTGACAGGAAGGAAAGATCAACAAAACTAGGGCATTCTGACAGACGTGCATAAATACTGTCACCTCTGGTGTGGACCCCACTTGGTTTGCAAAGGCACTTTAAATGAGGAAGTCTTCCCACAGGGAACAAGTAGGTAGTTTGCTGAGAGGCTTTGCTGGGACCCCTCTTTAAAAATCCTGCCTCTCAATCGTCCACCATGGAACTGTAATTGCACTTAGGTCAAAGGtcaattagggttagggtgaagCTAGTTCCCCCCGTTCTCAAACTTCCAGCGCTGGTGCTTGTCCCCGGGGGTGCACGTCCTCATCTGGACGTCCGCTCGCCCCTCGGCTGTGCGGCAGGAGGTGACACACATGTCTGAGTGAGGGTGGTATATGGTCCCGTCCTCTCTGAACTCCCAGATGATGGTGGGGGGTGTAGGGGTTCTGTCGTGGGGGCAGTGTTTCATCCCAATGTaactctgtccctctgggacctCGGCACACAGCTCCGTCACAGAGTTATAGCGGATCTCCTTATGAGTCGTGTACTCAAAGTACTAGGGGAAAGAGAGATGCATGGTTAAACTCTGCTGATCTGAATTATAGTAACCATCGTACCTGGGGAATGGATGAATGTTTACTCTCGGTGCTTCTACTTATCAAATCAGCAGCTCCAAACATTAGCATTCAACAGTTAAGAGATTTCACCAAAATAATCGCTTACTTTTAAGAGAGAAATGGTTGGATCTAGGTCTAAAGTAATGTCTGTTGAGCAagcaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795682 lncRNA downstream 12023 60725409 ~ 60728216 (-) True G1569430
TU1795661 lncRNA downstream 108288 60625780 ~ 60631951 (-) True G1569410
TU1795649 lncRNA downstream 123947 60610487 ~ 60616292 (-) False LOC110496651
TU1795725 lncRNA upstream 237 60742046 ~ 60743190 (-) True G1569466
TU1795724 lncRNA upstream 1536 60743345 ~ 60744221 (-) True G1569465
TU1795734 lncRNA upstream 11683 60753492 ~ 60755163 (-) True G1569475
TU1795735 lncRNA upstream 26680 60768489 ~ 60769195 (-) True G1569476
TU1795743 lncRNA upstream 30437 60772246 ~ 60772482 (-) True G1569484
XM_021572670.2 mRNA downstream 69669 60645610 ~ 60670570 (-) True c18h18orf21
LOC110496651 mRNA downstream 98085 60616256 ~ 60642154 (-) False LOC110496651
XM_036953432.1 mRNA downstream 136321 60425049 ~ 60603918 (-) False LOC110496650
XM_036953440.1 mRNA upstream 525472 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA upstream 528974 61270783 ~ 61323861 (-) False elp2
XM_021572676.2 mRNA upstream 737219 61479028 ~ 61493313 (-) True LOC110496657
XM_036953444.1 mRNA upstream 803850 61545659 ~ 61566202 (-) False LOC110496659
XM_036953443.1 mRNA upstream 803850 61545659 ~ 61587847 (-) True LOC110496659
TU1795693 other downstream 46140 60693378 ~ 60694099 (-) True G1569439
TU1795648 other downstream 123947 60611792 ~ 60616292 (-) False LOC110496651
TU1795654 other downstream 124223 60610487 ~ 60616016 (-) False LOC110496651
TU1796851 other upstream 549495 61291304 ~ 61293151 (-) True G1570468
TU1796842 other upstream 567998 61309807 ~ 61323821 (-) True elp2
TU1797091 other upstream 923519 61665328 ~ 61665910 (-) True G1570695
TU1799050 other upstream 2693989 63435798 ~ 63491169 (-) True G1572487
TU1799674 other upstream 3271970 64013779 ~ 64014965 (-) True G1573054

Expression Profile