RNA id: TU1796238


Basic Information

Item Value
RNA id TU1796238
length 535
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1569933
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61097237 ~ 61102091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatttactgtagtgtttttgcataAATTACCATAATATTGAGTGTTTTTGTTTGATTATGTTTGACATAGAAATGGAGTCGTTCTCCTTCAGGAAACTTActggaaaaatacaaaaaaaatgaatcttccataacctgtaggtaggtaaataggtaggtaaataggtaggtaggaaAATAGGTAGGTAGggaaataggtaggtaggtaaataggtaggtagataggtaggtaggtgggtaggtaggtatgtatgtaaatatgtaggtaggtaaatatgtaGGTTGGTAAATAGGTAGgtcggtaggtaggtaggtaaataggtaggttggtaaataggtaggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaggtaggtaggtaggtaggtaggtaggtgggtaggtaggtaggtatgtaggtaaatatgtaggtaggtaaataggtaggtaggtaaataggtaggtaggaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795743 lncRNA downstream 326810 60772246 ~ 60772482 (-) True G1569484
TU1795735 lncRNA downstream 330097 60768489 ~ 60769195 (-) True G1569476
TU1795734 lncRNA downstream 344129 60753492 ~ 60755163 (-) True G1569475
TU1795724 lncRNA downstream 355071 60743345 ~ 60744221 (-) True G1569465
TU1795725 lncRNA downstream 356102 60742046 ~ 60743190 (-) True G1569466
TU1796329 lncRNA upstream 152225 61254316 ~ 61257570 (-) True G1570016
TU1797026 lncRNA upstream 424423 61526514 ~ 61526841 (-) True G1570633
TU1797042 lncRNA upstream 486055 61588146 ~ 61588404 (-) True G1570649
TU1797051 lncRNA upstream 501171 61603262 ~ 61603611 (-) True G1570657
TU1797056 lncRNA upstream 506808 61608899 ~ 61609236 (-) True G1570661
XM_021572670.2 mRNA downstream 428722 60645610 ~ 60670570 (-) True c18h18orf21
LOC110496651 mRNA downstream 457138 60616256 ~ 60642154 (-) False LOC110496651
XM_036953432.1 mRNA downstream 495374 60425049 ~ 60603918 (-) False LOC110496650
XM_036953440.1 mRNA upstream 165190 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA upstream 168692 61270783 ~ 61323861 (-) False elp2
XM_021572676.2 mRNA upstream 376937 61479028 ~ 61493313 (-) True LOC110496657
XM_036953444.1 mRNA upstream 443568 61545659 ~ 61566202 (-) False LOC110496659
XM_036953443.1 mRNA upstream 443568 61545659 ~ 61587847 (-) True LOC110496659
TU1795693 other downstream 405193 60693378 ~ 60694099 (-) True G1569439
TU1795648 other downstream 483000 60611792 ~ 60616292 (-) False LOC110496651
TU1795654 other downstream 483276 60610487 ~ 60616016 (-) False LOC110496651
TU1796851 other upstream 189213 61291304 ~ 61293151 (-) True G1570468
TU1796842 other upstream 207716 61309807 ~ 61323821 (-) True elp2
TU1797091 other upstream 563237 61665328 ~ 61665910 (-) True G1570695
TU1799050 other upstream 2333707 63435798 ~ 63491169 (-) True G1572487
TU1799674 other upstream 2911688 64013779 ~ 64014965 (-) True G1573054

Expression Profile