RNA id: TU1797026


Basic Information

Item Value
RNA id TU1797026
length 234
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1570633
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61526514 ~ 61526841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagactttaccgtggaatgcttacttacaagcccttaaccaacagtgtagactttaccgtgaaatgctgacttacaagcccttaaccaacagtgtagactttaccgtgaaatgctgacttacaagcccttaaccaacagtgtagactttaccgtgaaatgctgacttacaagcccttaaccaacagtgtagactttaccatggaatgctgacttacaagcccttaaccaacag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1796329 lncRNA downstream 268944 61254316 ~ 61257570 (-) True G1570016
TU1796237 lncRNA downstream 424423 61097237 ~ 61102091 (-) False G1569933
TU1796239 lncRNA downstream 424423 61097237 ~ 61102091 (-) False G1569933
TU1796238 lncRNA downstream 424423 61099292 ~ 61102091 (-) True G1569933
TU1795743 lncRNA downstream 754032 60772246 ~ 60772482 (-) True G1569484
TU1797042 lncRNA upstream 61305 61588146 ~ 61588404 (-) True G1570649
TU1797051 lncRNA upstream 76421 61603262 ~ 61603611 (-) True G1570657
TU1797056 lncRNA upstream 82058 61608899 ~ 61609236 (-) True G1570661
TU1797059 lncRNA upstream 88087 61614928 ~ 61615137 (-) True G1570664
TU1797060 lncRNA upstream 89516 61616357 ~ 61616560 (-) True G1570665
XM_021572676.2 mRNA downstream 33201 61479028 ~ 61493313 (-) True LOC110496657
XM_036953440.1 mRNA downstream 202653 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA downstream 202653 61270783 ~ 61323861 (-) False elp2
XM_021572670.2 mRNA downstream 855944 60645610 ~ 60670570 (-) True c18h18orf21
LOC110496651 mRNA downstream 884360 60616256 ~ 60642154 (-) False LOC110496651
XM_036953444.1 mRNA upstream 18818 61545659 ~ 61566202 (-) False LOC110496659
XM_036953443.1 mRNA upstream 18818 61545659 ~ 61587847 (-) True LOC110496659
XM_021572680.2 mRNA upstream 163210 61690051 ~ 61708402 (-) True LOC110496662
XM_021570533.2 mRNA upstream 270171 61797012 ~ 61827619 (-) False hsf1a
XM_021570534.2 mRNA upstream 270171 61797012 ~ 61827619 (-) False hsf1a
TU1796842 other downstream 202693 61309807 ~ 61323821 (-) True elp2
TU1796851 other downstream 233363 61291304 ~ 61293151 (-) True G1570468
TU1795693 other downstream 832415 60693378 ~ 60694099 (-) True G1569439
TU1795648 other downstream 910222 60611792 ~ 60616292 (-) False LOC110496651
TU1795654 other downstream 910498 60610487 ~ 60616016 (-) False LOC110496651
TU1797091 other upstream 138487 61665328 ~ 61665910 (-) True G1570695
TU1799050 other upstream 1908957 63435798 ~ 63491169 (-) True G1572487
TU1799674 other upstream 2486938 64013779 ~ 64014965 (-) True G1573054
TU1799679 other upstream 2656117 64182958 ~ 64244814 (-) True LOC110496680
TU1800646 other upstream 3443450 64970291 ~ 64971167 (-) False G1573887

Expression Profile