RNA id: TU1797091



Basic Information


Item Value
RNA id TU1797091
length 583
RNA type TUCP
GC content 0.48
exon number 1
gene id G1570695
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61665328 ~ 61665910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacaAAAGGCGCACCTTTGTTCACTCCGGCGAGTTAAAACTCCCGGTGTGAACAAAACACAATACTAGTCCACATCATAGCCATATATTTAGAACAATATGGCTCTGGTCCACATCCACAAAATCTTCCAACTGCTCCTCGAATAATGGATAGGACACAGACAGACCAAACAGCTTTCAGTGTGTACAGGGTCGATAATAAACCCTACATAACCCTCGAAGAACAAGCGCACGCTGATTATAAATGAGAAGAGACCTATGTGGCCAAACGAGTTTATGCGcccgtctctacctctctctcgttGCTCTATCCCCTCCCCGTGCCGCTTACCTTACGCAGCTCCCTGATCGGAATCCTGTTGTTCCCAAGAGAATAAGAGGAGGTAAACAGTCTCTACAGCCGACACCAAAATGCCTTTTTTCTCAGACTCTGTTGAGACAGTTCAGACTTGTTTTATGGCACGTAGTACACTGTCGCCTACTCCGCTACACGCCATCGGTCTGCAACTCCTATCACAGCAAAGCAGACACAGCCTCCTCTACCCatacgagagggagggagagccacCCCCAACTATATATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1797087 lncRNA downstream 2667 61662455 ~ 61662661 (-) True G1570692
TU1797083 lncRNA downstream 8839 61656224 ~ 61656489 (-) True G1570688
TU1797082 lncRNA downstream 13341 61651687 ~ 61651987 (-) True G1570687
TU1797066 lncRNA downstream 40753 61624356 ~ 61624575 (-) True G1570671
TU1797060 lncRNA downstream 48768 61616357 ~ 61616560 (-) True G1570665
TU1797095 lncRNA upstream 64 61665974 ~ 61666911 (-) False G1570696
TU1797094 lncRNA upstream 401 61666311 ~ 61666911 (-) False G1570696
TU1797096 lncRNA upstream 401 61666311 ~ 61667052 (-) True G1570696
TU1797097 lncRNA upstream 3893 61669803 ~ 61670018 (-) True G1570697
TU1797099 lncRNA upstream 7791 61673701 ~ 61673951 (-) True G1570699
XM_036953443.1 mRNA downstream 77481 61545659 ~ 61587847 (-) True LOC110496659
XM_036953444.1 mRNA downstream 99126 61545659 ~ 61566202 (-) False LOC110496659
XM_021572676.2 mRNA downstream 172015 61479028 ~ 61493313 (-) True LOC110496657
XM_036953440.1 mRNA downstream 341467 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA downstream 341467 61270783 ~ 61323861 (-) False elp2
XM_021572680.2 mRNA upstream 24141 61690051 ~ 61708402 (-) True LOC110496662
XM_021570533.2 mRNA upstream 131102 61797012 ~ 61827619 (-) False hsf1a
XM_021570534.2 mRNA upstream 131102 61797012 ~ 61827619 (-) False hsf1a
XM_036951030.1 mRNA upstream 131183 61797093 ~ 61828577 (-) False hsf1a
NM_001124749.1 mRNA upstream 133591 61799501 ~ 61827587 (-) True hsf1a
TU1796842 other downstream 341507 61309807 ~ 61323821 (-) True elp2
TU1796851 other downstream 372177 61291304 ~ 61293151 (-) True G1570468
TU1795693 other downstream 971229 60693378 ~ 60694099 (-) True G1569439
TU1795648 other downstream 1049036 60611792 ~ 60616292 (-) False LOC110496651
TU1799050 other upstream 1769888 63435798 ~ 63491169 (-) True G1572487
TU1799674 other upstream 2347869 64013779 ~ 64014965 (-) True G1573054
TU1799679 other upstream 2517048 64182958 ~ 64244814 (-) True LOC110496680
TU1800646 other upstream 3304381 64970291 ~ 64971167 (-) False G1573887
TU1800648 other upstream 3304457 64970367 ~ 64971167 (-) False G1573887

Expression Profile