RNA id: TCONS_00004641


Basic Information

Item Value
RNA id TCONS_00004641
length 3912
RNA type mRNA
GC content 0.54
exon number 27
gene id XLOC_002476
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 81897 ~ 108952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGAAGTTATTCGCCAAATTAGAGTCGACAGAGAGGAAGTTTCAGTCTCTGGTGCATTATGGGATGGGCAGAGTGTATCTGAAGGAGaacagGTTTGCTAAAGCGCGTGAGTGTTTCTCTAATGCGCTGCTGATGATCCAGAGACACATCACACCTGGAAAACTCACCTGGCCCACCACCAAAGCTATAGTGGAGGAGACACAGCCGGCCTGgctacagGAGCACCTGGAGAGCCTGGTGGAGGTGTGCAGGTTTCCTCCTAAAGCAGACGCTGTGTGTCGTCATCAGCAGTGTGTGTCCCACAGCGTCCAGATCTACTTCAGCGACCCTGActttaaggggtTCATCCAGCTGGTGTGTTGTCAGAGCTGCAGAATCGAGTTTCATATGAGCTGCTGGAGGAAGCTCAAAACACTTTCATTCGCTGATAAGAATGACAAGGATTTTCTAAAAGATTCATGTTTTACGCCAGACTGCGCTGGGCAGATCTGTCACATCCTAATATTTGGCTCGACAGGGCTGATAAAGTGTGagTTTAAATCATCTATTCCTAAAGCCAGAGCTGCGGGACGCTCCAGACTCCGGCAGCAGTGTACGAGTATTAAGAAGTTGATGTCTAAAAATGATCGTAAACTTCGGCGGAAGCAGCAGAGATTGGCGGCGCGTTCATCCCATCAGGAGAAAAGAGAAGTAATGCGTGAGGAAGCAGCTAAAGAGCAGCCGGCggacagagCATCACCCAGAGACTGTATTTATATGGACCGTGTTTTACAACAAATTCATGATAACAAAGCACTTTTTAAAGAAGAGCCAGTGAGCATTTCCTGTTTTTGGGAGCATCTGCGGCCGTGGCTGGACTTGTTTGAGAGTAAAGGACAGGAGAGCGTGTTAAACAGCCGTAGAGGTGTTGGGGTGCTGTCGGAGCTGGTGGATCTGCTGCTGGAGTCCAGAAACCGGGTCTGGGCTCGAGTGTTTATTCAGACGCTGGGCTCCACGCTTCATATCAAACCCAGACTGCAGCACTGGGCTCAGCAGCTGGACGACACCGGTCTGAAGGCCGCTCAGTCATTCATCAACCGCTATCGATCTCACCTGGAGGATCTGGAGCTGAAGCCTCTGCTCTCCTTCCCGCCGCTGCAGGAGTCGCTCGTTGAGAAATTGGGCAGCGTTACGGAGTTATTTGACCGTGACGATTTTACTGTAATGGAGTACTTAAGACAAGCTCCCGCTAAAGAAATGCGTCTGTTTATTTGGACTCTAGAGTCGAGTCGAGAGCGATATCAGAGCTGTCACACCATTCTCGATCAATATTTTGAAGACGatgcTGTTTGTTTAGTCATTAAAAAGACAGATGATGATGAGCACATgagttcAGTATTTAAGAGTAAAAACAGACATCGCAAAAAGAAGCATAAGGAATTAAAGtctgtTATTGTGCTGTCTGGAATGAGAGCGGGTCATTCGCgagatgaggatgatgaagatgagctGTTCTCTGAGGAAGACTCTCTAATGTTCCTGAATGATATGGATCCGTTCAGCGTTCCGGATCACCTGCGCTATCAGCTGGCGGAGTTTGAGGAGAACTATAGCGGATCCGCACAGCGCAGCTACTACGAGCGCATGCTGGACAACCACCCGGACCCCACCAAGGAGACTTTATATGATTATTTCGCTCAGGTTCTGGAGGAGCACGGACCCCTGTGTGCCACGGACCCGCTGCTGGTGGGCGAGCTGCAGAACTTCCCTCTGGAGGCGCAGCAGCAGATCGCAGACGCCGGCGGGCTCCAGGCCTTCCTGCTGCAGTCTCTGCGCTTCACCATGACGGAGCGGCTGATCGGGCTGATGAAGCACGCCGTGTGTCTGTCTGAGAGCagcaacacacactcacagatccTCAACCCCTCCGCGTCCGAGTTCTGGCCGCTGTCCGGAGAGCCTCCGTCCAGCACAGGTGAGCCGGCGCTGCTGCTGCCCGACCCCTACACTGATGAGGAAGATCAGCTCTCAGCAGCAGAGATGACCGAGTCCGACACTGAAGAGACGCGAGCTGAGAAACACACTGCTGTACGTGCACAGGATTTTCAGGATCGGACAGACGTGTCGGTCAACACAGAGCCGTGTGCCCCCTTCGAGAACAACAGTggtgAGCTGATGGGCTTGCAGAAGCGTCGGCTGTATCTGCTGGAGGAGCTGCAGCGCATCAGGGCTGATGGAGAAGCGGAGCAGCAGAGGAGGCAGGAGGAGCTGACGGAGCTGCAGGAGGACACACACAACATCAGTCAGAGGATGCagATCGCCAGCACGGAGCTCAGCATGTTCCAGCAGAAACTGGAGGAGGAGGTGAAGAAAGACCAGCAGGAGAAGAAGGAGAACCAGGAGACTCTGAGGAGCCTCAAGATGGAGATCAAGGAGCTGGTGGAGCTGCAGGAGAgcTTGAGCAGAGACATCAGTGTGAGGAACAGACAATACGAGGCGGAGCTGGAGCTCTTCCTGGATGTTAGtaacCAGTGTGCAGCTGAGCGCTTGAGTCTGGAGGACGAGATCAAGAGGTTCAGAGATGCGTGTGTGAAAGCAGAGCGGAGATCAGCCAGTGCTCAGctgtgTGTCCTCCAGAGCAGGCGTGAACATGCGCTGCGGCGTCTTCGCATGACTGTGTCTGAGGGGAAGATGGTGGTCAAACACCTGTCCGACGTGGccctcagTTCCCCCTCGGCTGCGCTGCTGTCCGCCATCGAGGACTGGAAGAGACACGTGAGCGAGGCGGAGGGACGCATACATGCCACTGAGGAGGAGTGTGAGGCTCAGATGCAGGCGGTGCAGCAGGGCTCCAGACTCTGCTCTCTTCCAGACATCAGCACCCCCAGTGTTCCCTCCGCACCCGCTCTACCGGCCCTGCAGACGCCGGTGTCCAGTGCAGCTCCAGAAGAGTCCTCCAGCCGCAGGTCTGCAGCGCCGCAGCACCTCAGTGTGTACGAGCGCATCGTGGAGAGACTGCACATCATGTTCCCTCATTACGAcaggctggTGCTGAATAAGTTCCTCCAGGAGGTGCGCTCCTCCTGCAGTGGTGGCGTCCTCAGCTCACTGACTTATAATGAGGTGATCAACCGTGTGGCTCagctgatcctggaccatcaggAGAACATATGTCAGATGAACATCACTGCTGGAGACGCTGCAGATCTGAGCTGTCCTCCGTCAGACTGCACACTCAGAGCCGCTGGAACTCCACCGCTCACACACGTCTGGAAGAACGTCCCGGAGAAACACCGCAACTCTGCACTGGTGCTCAACATGGAGGACCCGTGCATCATCTGCCATGAGGACATGAGTGCGGAGGATCTGTGTGTGCTGGAGTGCCGCCACAGCTTCCacagagagtgtATAAAGTCGTGGCTGAAGGAGCAGAGCACCTGTCCCACCTGTCGAGAGCATGCGCTGCTGCCGGAGGACTTTCCCCTGCTGCCTGGCAGACAACGCAGAACACACACCGCCAgctgaacaacacacacacacacacacacacacacccagccgTCTGAACACCACTGTGACAGACACACTCGTATACACCCATAACGCTTCTGAACACCACTTTAACACActtctatacacacacattcatttacacttACACTGCCAGCCGAACAccactgtaacacacacacacacaccaccagaCAAAATCCAGTCTAACACACTCCTGTAAACACGTCCAGCTGAACAccactgtaatacacacacacacgcgcgcacgcacacaggCGGAGTGTTTCAGTGGTCAGCTGTGTGGACCAATCAGATGCGTGCTGCTCGCTCCTGTAATAAAGCTGCTGCTGCTGATTTTACTCACACTTTTACCTTCTGCTCGTGTTTTACCCTCCTGTTTTACAGCATTAAACTGTTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-3 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human TTC3 (tetratricopeptide repeat domain 3).

Ensembl:

ensembl_id ENSDART00000146125

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005737 lncRNA downstream 29923 48851 ~ 51974 (-) True XLOC_002473
TCONS_00004633 lncRNA downstream 36411 32901 ~ 45486 (-) False XLOC_002472
TCONS_00005955 lncRNA upstream 73225 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 73225 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 73225 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005958 lncRNA upstream 85679 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004649 lncRNA upstream 112898 207082 ~ 208586 (-) True XLOC_002481
TCONS_00004638 mRNA downstream 5530 72050 ~ 76367 (-) False XLOC_002475
TCONS_00004635 mRNA downstream 5545 62369 ~ 76352 (-) False XLOC_002475
TCONS_00004637 mRNA downstream 7473 72050 ~ 74424 (-) False XLOC_002475
TCONS_00004636 mRNA downstream 7489 63206 ~ 74408 (-) False XLOC_002475
TCONS_00004634 mRNA downstream 24627 53587 ~ 57270 (-) True XLOC_002474
TCONS_00004644 mRNA upstream 5187 99371 ~ 105100 (-) True XLOC_002476
TCONS_00004645 mRNA upstream 21931 116115 ~ 120580 (-) True XLOC_002477
TCONS_00004646 mRNA upstream 30811 124995 ~ 135432 (-) True XLOC_002478
TCONS_00004647 mRNA upstream 67476 161660 ~ 167782 (-) False XLOC_002479
TCONS_00004648 mRNA upstream 112812 206996 ~ 210703 (-) False XLOC_002481
TCONS_00004640 other downstream 5706 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 7507 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004658 other upstream 245728 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2772536 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2774294 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3412356 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3674467 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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