RNA id: TCONS_00004643


Basic Information

Item Value
RNA id TCONS_00004643
length 413
lncRNA type retained_intron
GC content 0.53
exon number 3
gene id XLOC_002476
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 81897 ~ 108952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcatacattatacacactcacactatacacacatatgctacacacacactgtgctgctgctgattgtgtgtgtgtgtcctccagcTTGAGCAGAGACATCAGTGTGAGGAACAGACAATACGAGGCGGAGCTGGAGCTCTTCCTGGATGTTAGtaacCAGTGTGCAGCTGAGCGCTTGAGTCTGGAGGACGAGATCAAGAGGTTCAGAGATGCGTGTGTGAAAGCAGAGCGGAGATCAGCCAGTGCTCAGctgtgTGTCCTCCAGAGCAGGCGTGAACATGCGCTGCGGCGTCTTCGCATGACTGTGTCTGAGGGGAAGATGGTGGTCAAACACCTGTCCGACGTGGccctcag

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-3 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human TTC3 (tetratricopeptide repeat domain 3).

Ensembl:

ensembl_id ENSDART00000105698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005737 lncRNA downstream 33546 48851 ~ 51974 (-) True XLOC_002473
TCONS_00004633 lncRNA downstream 40034 32901 ~ 45486 (-) False XLOC_002472
TCONS_00005735 lncRNA downstream 40177 38581 ~ 45343 (-) False XLOC_002472
TCONS_00005736 lncRNA downstream 40177 38709 ~ 45343 (-) True XLOC_002472
TCONS_00005954 lncRNA downstream 42677 38107 ~ 42843 (-) False XLOC_002472
TCONS_00005955 lncRNA upstream 81061 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 81061 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 81061 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005958 lncRNA upstream 93515 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004649 lncRNA upstream 120734 207082 ~ 208586 (-) True XLOC_002481
TCONS_00004638 mRNA downstream 9153 72050 ~ 76367 (-) False XLOC_002475
TCONS_00004635 mRNA downstream 9168 62369 ~ 76352 (-) False XLOC_002475
TCONS_00004637 mRNA downstream 11096 72050 ~ 74424 (-) False XLOC_002475
TCONS_00004636 mRNA downstream 11112 63206 ~ 74408 (-) False XLOC_002475
TCONS_00004634 mRNA downstream 28250 53587 ~ 57270 (-) True XLOC_002474
TCONS_00004644 mRNA upstream 13023 99371 ~ 105100 (-) True XLOC_002476
TCONS_00004645 mRNA upstream 29767 116115 ~ 120580 (-) True XLOC_002477
TCONS_00004646 mRNA upstream 38647 124995 ~ 135432 (-) True XLOC_002478
TCONS_00004647 mRNA upstream 75312 161660 ~ 167782 (-) False XLOC_002479
TCONS_00004648 mRNA upstream 120648 206996 ~ 210703 (-) False XLOC_002481
TCONS_00004640 other downstream 9329 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 11130 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004658 other upstream 253564 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2780372 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2782130 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3420192 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3682303 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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