RNA id: TU1802222


Basic Information

Item Value
RNA id TU1802222
length 2562
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1575169
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65713768 ~ 65716640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaatacattttatttaccATTTTGAAAAGAGATTACAATTCATTATTTAATTGATCAATTCTAGGAATTTGTCCTCTGGTCTTTAAACATACGGTACACTATGTGTCATGACATATACATAGAGAAAGCCTGTGATTTTTATTACACTATTCATGGCCATCAGTAAATGAATGGCTGTAGCACTATCTACGAAGAGTAATTTCAGTCTAAGCTCTCAACATTGCAGCAGCACAACTTTTCAACCCCCCCCACCCAACcaggtttttgccctagcactacacagcggaTTCTaatcatcaaagcttgatgagttggttattttaaATCAGCCGTGTAGTtctagagcaaaaaccaaaacgtgcacctggggggggggggggggggggggggggggatcaggacTGAGTTTGGAAAACACTGATCTAGACCAGGACTTCCTATCCTAACacgactgagacagacaggcacacttTACAAAATGACAGACATTCAACAGTTCCTTTCTATCAGTCTAGCTGGAGTTCTGTACACGATGCAAATGGTTATACATAACAATCTAATGGATTCTCTAGTGTTTTGCCAGCAAAACAGCAATCACTTTCACTCACAAGAATAACAATGATTGATATGTGCTCTTACAGCAGAAGACCTAATATTGATTACCCCATCTTCTGTATTTATGACACAAATATATTACTACAAACAGCTTGTCAACACAGTCTTAGGAGCGTAAATGTGTAAAAGTGCAGGCATGAGAAGAACAAAGGTtagaaaataatacatttttccccactTAGGGAGTACATTTATTTTTAGATGTATAAATAGTTTTACATATTTAGAGCTTggtaatatatttatatttgcttTCTGTTAAGGAGTCAAGTGGGGGGGGGGAAAGTGTTTTTAAAAGACTACTTTGTGATTACTCTGACTGTAAGATGAACAGTACCTGGAAATGGAAAACCAATGGACTTTTTGGTCAGATACAGATAATATAACATGAAATAATATTGCAGATTTCTtgtaaaatacaatattttgtgtCTGCTTTCTATACATTGTAATTTTTTGGCTTCCAACATTGTCTGCATGTGGAGAAAAAGTGGTGACCAGCAGAATTAAGTTCAGACGGTACAATGATACCTTATTTGATCCAAAACAAACTTATTTCACGTTGATCATTTCTGGTGTTTTCCTACTTGTTTAGTTAATATATTTTGATGGTGAACAGATGTTACTGTTGTGATTTTGAGGGTGAACAGATGTTACTATTGTGATTTTGAGGGTGAACAGATGTTACTATTGTGATTTTGAGGGTGAACAGATGTTACTATTGTGATTTTGAGGGTGAACAGATGTTACTATTGTGATTTTGAGGGTGAACAGATCAATAGTATGATTTTGAGGGTGAAAAGGAACAGATCAATAAGTATGATTTTGAGGGTGAAAAGGAACAGATCAATAAGTATGATTTTGAGGGTGAAAAGGAACAGATCAATAAGTATGATTTTGAGGGTGAAAAGGAACAGATCAATAAGTATGATTTTGAGGGTGAACAGATCAATAAGTGTGATTTTGAGGGTGAACAGATCAATAAGTATAATTTTGAGGGTGAACAGATCAATAAGTGTGATTTTGAGGGTGAACAGGAACAGATCAATAGTATAATTTTGAGGGTGAACAGATCAATAAGTATGATTTTGAGGGTGAACAGATCAATAGTATGATTTTGAGGGTGAACAGATCAATAAGTATGATTTTGAGGGTGAACAGATCAATAAGTATGATTTTGAGGGTGAACAGATCAATAAGTATGATTTTGAGGGTGAACAGATACGCAGCTGAACATGAGACAGAGTGGATGCTTAAACAATGCAATCACCCTTAATGCCTCAAGTGCAATCCAGCATTCACACAACAAACGACAACAAATGCCTTGTGACATGTAAGtcttcagtatatatatatacagaatgATCAGGAAGGCAGGGCCCTCTCCAGTCTGTGTTTGATGCAGCCTAGCCGTGTCGGAAGCGGTACTGCCACTTCACTTGTCTTTCCGACAGTGGTCGTGGTCCACAGCGATTAGAGAGAAACGTCCTTTCTCCCTGTAGTACGAAACAACGTCCCACCTTGGCACACTTTGCATCAGGTAAGTAGGGTCATTGGTATTGAAGATTGGAGTCCCATGTGATGCACACCTCTCATGCAACAATCCCAGAAGATTGAGttgtagaccccccccccccctttcctctcaggcatgttcaggagtcttattaaCAGACCATGAACACCTCCCACACCACTCATACAGTACATGGTGCCTGTCTCTTGCCTGTATCTCTATTTGTTCCCATCCCCCTCTCATCATCAATAGAGGTGATGAAGATAGAGGAGTCCCTCACATGAAGCCGTCAGCGGGTCCATAGGAGAAGCCTGGGAAGGCTCCAGCTGCCTCCTTGATGCTGCTGGTCACCAGCAGGCCGTCCGTGTTGCACAGCGACGAGGTCACAGGGAGGTGGGTGAACTCTGGGTCAAAGTGCCTGAGGTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802383 lncRNA downstream 4173 65703376 ~ 65709595 (-) True G1575289
TU1802369 lncRNA downstream 23917 65680748 ~ 65689851 (-) True G1575278
TU1802310 lncRNA downstream 110682 65602841 ~ 65603086 (-) True G1575232
TU1802216 lncRNA downstream 209075 65501734 ~ 65504693 (-) True G1575168
TU1802253 lncRNA downstream 221766 65490907 ~ 65492002 (-) True G1575188
TU1802409 lncRNA upstream 17051 65733691 ~ 65763466 (-) True G1575314
TU1802413 lncRNA upstream 24053 65740693 ~ 65742149 (-) True G1575318
TU1802416 lncRNA upstream 27394 65744034 ~ 65744396 (-) True G1575320
TU1802439 lncRNA upstream 51718 65768358 ~ 65768692 (-) True G1575332
TU1802440 lncRNA upstream 52411 65769051 ~ 65769287 (-) True G1575333
XM_021572739.2 mRNA downstream 93568 65610940 ~ 65620200 (-) True LOC110496703
XM_036953558.1 mRNA downstream 111867 65514942 ~ 65601901 (-) True LOC110496890
XM_036953538.1 mRNA downstream 592712 65056656 ~ 65121056 (-) False LOC110496698
XM_036953537.1 mRNA downstream 597712 65056951 ~ 65116056 (-) True LOC110496698
XM_036953539.1 mRNA downstream 610013 65056656 ~ 65103755 (-) False LOC110496698
XM_021572743.2 mRNA upstream 38481 65755121 ~ 65767988 (-) True LOC110496706
XM_021572744.2 mRNA upstream 54275 65770915 ~ 65781022 (-) False xkr8.3
XM_036953528.1 mRNA upstream 178344 65894984 ~ 66007363 (-) False epb41a
XM_036953529.1 mRNA upstream 178344 65894984 ~ 66007363 (-) False epb41a
XM_036953533.1 mRNA upstream 178344 65894984 ~ 66007363 (-) False epb41a
TU1802126 other downstream 402717 65310043 ~ 65311051 (-) True G1575088
TU1800646 other downstream 742601 64970291 ~ 64971167 (-) False G1573887
TU1800648 other downstream 742601 64970367 ~ 64971167 (-) False G1573887
TU1799679 other downstream 1468954 64182958 ~ 64244814 (-) True LOC110496680
TU1799674 other downstream 1698803 64013779 ~ 64014965 (-) True G1573054
TU1802374 other upstream 80990 65797630 ~ 65798675 (-) True G1575282
TU1802602 other upstream 297829 66014469 ~ 66053735 (-) True G1575457
TU1802627 other upstream 339042 66055682 ~ 66056239 (-) True G1575475
TU1802672 other upstream 521458 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other upstream 521458 66238098 ~ 66242696 (-) True ppp1r11

Expression Profile