RNA id: TU1802409


Basic Information

Item Value
RNA id TU1802409
length 522
lncRNA type read_through
GC content 0.33
exon number 2
gene id G1575314
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65733691 ~ 65763466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaagttcaaaggggccgaatactttcgcaaggcactgtatgtcccttAAGAtccttgtgtaatgtgatattgtaccccccaGCCCCGCCCTCTATCCCCCCTAGCCCAATTGTCCTTTGTATATTAGttatatatacttgtgttcccacatgtacttcctgtattgattcgttaacaacaacaaaaaagcatgGCTCCCGTTGATGACATCACAGCATTAACATAATtgtagaaaataaatacaataaaataattcACTCTTGAAAGTAATGTAATACATCTTTAAAACAACCTTaataataaattaaaataaatatgagGGATTTTTGGTGAAATACATAAAGTATATTTTACATACACCGATTAATTATAATACTATTCTCTTCATTTTAAGTTTTGCAGTTGGAATTACTAAAGGTGTTTTCAGTTTAACTTTTTGGACGACATGGGACCCACTATGCCTGGCTTGCATAACTTAGTTTATGAAATGAAGGAAATAAGTATgaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802221 lncRNA downstream 17051 65713768 ~ 65716640 (-) False G1575169
TU1802222 lncRNA downstream 17051 65713768 ~ 65716640 (-) False G1575169
TU1802223 lncRNA downstream 17051 65713768 ~ 65716640 (-) False G1575169
TU1802225 lncRNA downstream 17051 65713768 ~ 65716640 (-) True G1575169
TU1802383 lncRNA downstream 24096 65703376 ~ 65709595 (-) True G1575289
TU1802439 lncRNA upstream 4892 65768358 ~ 65768692 (-) True G1575332
TU1802440 lncRNA upstream 5585 65769051 ~ 65769287 (-) True G1575333
TU1802379 lncRNA upstream 7460 65770926 ~ 65771627 (-) True xkr8.3
TU1802442 lncRNA upstream 12951 65776417 ~ 65776728 (-) True G1575335
TU1802443 lncRNA upstream 14979 65778445 ~ 65778752 (-) True G1575336
XM_021572739.2 mRNA downstream 113491 65610940 ~ 65620200 (-) True LOC110496703
XM_036953558.1 mRNA downstream 131790 65514942 ~ 65601901 (-) True LOC110496890
XM_036953538.1 mRNA downstream 612635 65056656 ~ 65121056 (-) False LOC110496698
XM_036953537.1 mRNA downstream 617635 65056951 ~ 65116056 (-) True LOC110496698
XM_036953539.1 mRNA downstream 629936 65056656 ~ 65103755 (-) False LOC110496698
XM_021572744.2 mRNA upstream 7449 65770915 ~ 65781022 (-) False xkr8.3
XM_036953528.1 mRNA upstream 131518 65894984 ~ 66007363 (-) False epb41a
XM_036953529.1 mRNA upstream 131518 65894984 ~ 66007363 (-) False epb41a
XM_036953533.1 mRNA upstream 131518 65894984 ~ 66007363 (-) False epb41a
XM_036953524.1 mRNA upstream 131518 65894984 ~ 66007364 (-) False epb41a
TU1802126 other downstream 422640 65310043 ~ 65311051 (-) True G1575088
TU1800646 other downstream 762524 64970291 ~ 64971167 (-) False G1573887
TU1800648 other downstream 762524 64970367 ~ 64971167 (-) False G1573887
TU1799679 other downstream 1488877 64182958 ~ 64244814 (-) True LOC110496680
TU1799674 other downstream 1718726 64013779 ~ 64014965 (-) True G1573054
TU1802374 other upstream 34164 65797630 ~ 65798675 (-) True G1575282
TU1802602 other upstream 251003 66014469 ~ 66053735 (-) True G1575457
TU1802627 other upstream 292216 66055682 ~ 66056239 (-) True G1575475
TU1802672 other upstream 474632 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other upstream 474632 66238098 ~ 66242696 (-) True ppp1r11

Expression Profile