RNA id: TCONS_00004644


Basic Information

Item Value
RNA id TCONS_00004644
length 884
RNA type mRNA
GC content 0.54
exon number 9
gene id XLOC_002476
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 81897 ~ 108952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCGTGTACGAGCGCTGGTGCAAGATGAAGCTGAAGCGGAAGCAGGACCTGGGTCACCTGATGCACGTGTCTGTGTTCTGGTGGCACATTCTGCTCCGCCAGCAGGAGAACCACCCCACCACCGCCTGGGCCGTCAAGATGGGCTTCCTGGACTCTAACGTGTCCAACGATTTGAGCCTGAAGAGGCTTGAGAAGATGGAGATTCTGGAGAGCATTCTGGCGACGATGGAGAGAGGCCTTTCTCTTAGAGACGTGGAGAACAAGGCCAGAGCCGTGGTGTCCTTGAGCCAGCGCTTCTTTCAGGAGGACTGTCTGACTGAGGCCATACGCTGGCTGCTGGACTCTGGAGATCCTGACCTGGGCCAGAAACTGATGGATCTGGGCTCGGTGGAGGTTCGCTACCTAACACTGAGCTTCGTCTTCATGGAGTACGCGCGCTATATTCAGGTGGTGTCCTGCAGCAAGAAGAAAGCCTTGATGGAGATGAAATTTGAGCCAGACTCTTGGAGTTTATCGAAAAGTGATGAAATGAAGAACAAAGGAAACGAGCActttcagaagaagaaatatGACGTTGCCTTAAAGTGGTACTCTAAAGCCATTAAATACCACCCGAATAACCACATCCTGTACGGGAACCGAGCGCTGTGTTTACTCCGCTCTGGGAAATATCTGAAAGCACTCGGAGATGGAAAGAGAGCCATTGTCTTACAGCCGGACTGGGCCAAGGGTCATTACCGGTTCTGTGACGCGCTCTTCTACCTGGGCGAGCACCAGAGGGCTCTGCTGGCCAACCAGCAGGCTCAGGACGCCTGCAGAGCAGATGTGGAGGGACAGAAAGACCTGCTGCAGCAGCACGAGCGCTTCCAGAGCGAACTGCAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-3 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human TTC3 (tetratricopeptide repeat domain 3).

Ensembl:

ensembl_id ENSDART00000145716

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004643 lncRNA downstream 13023 85520 ~ 86348 (-) False XLOC_002476
TCONS_00005737 lncRNA downstream 47397 48851 ~ 51974 (-) True XLOC_002473
TCONS_00004633 lncRNA downstream 53885 32901 ~ 45486 (-) False XLOC_002472
TCONS_00005955 lncRNA upstream 62309 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 62309 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 62309 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005958 lncRNA upstream 74763 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004649 lncRNA upstream 101982 207082 ~ 208586 (-) True XLOC_002481
TCONS_00004641 mRNA downstream 5187 81897 ~ 94184 (-) False XLOC_002476
TCONS_00004638 mRNA downstream 23004 72050 ~ 76367 (-) False XLOC_002475
TCONS_00004635 mRNA downstream 23019 62369 ~ 76352 (-) False XLOC_002475
TCONS_00004637 mRNA downstream 24947 72050 ~ 74424 (-) False XLOC_002475
TCONS_00004636 mRNA downstream 24963 63206 ~ 74408 (-) False XLOC_002475
TCONS_00004645 mRNA upstream 11015 116115 ~ 120580 (-) True XLOC_002477
TCONS_00004646 mRNA upstream 19895 124995 ~ 135432 (-) True XLOC_002478
TCONS_00004647 mRNA upstream 56560 161660 ~ 167782 (-) False XLOC_002479
TCONS_00004648 mRNA upstream 101896 206996 ~ 210703 (-) False XLOC_002481
TCONS_00004650 mRNA upstream 131357 236457 ~ 244745 (-) True XLOC_002482
TCONS_00004640 other downstream 23180 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 24981 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004658 other upstream 234812 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2761620 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2763378 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3401440 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3663551 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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