RNA id: TU1802633


Basic Information

Item Value
RNA id TU1802633
length 495
lncRNA type read_through
GC content 0.47
exon number 2
gene id G1575481
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66078114 ~ 66133797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatcaaatgtatttataaaggcctttttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaatctccatagaaaggccagaacccaggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctgtttgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcatagatgaccagcagggtcaaataataataatcacagtggttgtagagggtgcaacaggtcagaacctcaggagtaaatgtcagttggtttttcatCATTCAGAgcatctctacctctcctgctgtctctagagagttgaaaacagcaggtctgggacaggtagcacgtccggtgaacaggtcagggttccatagccgcaggcagaacagttgaaactggagcagcagcacgaccaggtggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802632 lncRNA downstream 719 66077196 ~ 66077395 (-) True G1575480
TU1802630 lncRNA downstream 2076 66075830 ~ 66076038 (-) True G1575478
TU1802620 lncRNA downstream 29363 66046470 ~ 66048751 (-) False G1575472
TU1802663 lncRNA upstream 84 66133881 ~ 66134171 (-) True G1575510
TU1802549 lncRNA upstream 1026 66134823 ~ 66135289 (-) True G1575413
TU1802548 lncRNA upstream 2911 66136708 ~ 66137973 (-) True LOC110496715
TU1802667 lncRNA upstream 18576 66152373 ~ 66152767 (-) True G1575514
TU1802545 lncRNA upstream 46599 66180396 ~ 66182213 (-) False LOC110496716
XM_036953555.1 mRNA downstream 10018 66051635 ~ 66068096 (-) True LOC110496714
XM_036953554.1 mRNA downstream 10021 66051635 ~ 66068093 (-) False LOC110496714
XM_036953525.1 mRNA downstream 38643 65894984 ~ 66039471 (-) False epb41a
XM_036953562.1 mRNA upstream 3651 66137448 ~ 66167665 (-) False LOC110496715
XM_036953563.1 mRNA upstream 3651 66137448 ~ 66167665 (-) False LOC110496715
XM_036953564.1 mRNA upstream 5457 66139254 ~ 66167669 (-) False LOC110496715
XM_036953565.1 mRNA upstream 6022 66139819 ~ 66167671 (-) False LOC110496715
XM_036953561.1 mRNA upstream 36899 66170696 ~ 66179524 (-) False LOC110496892
TU1802627 other downstream 21875 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 24379 66014469 ~ 66053735 (-) True G1575457
TU1802374 other downstream 279439 65797630 ~ 65798675 (-) True G1575282
TU1802126 other downstream 767063 65310043 ~ 65311051 (-) True G1575088
TU1800648 other downstream 1106947 64970367 ~ 64971167 (-) False G1573887
TU1802672 other upstream 104301 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other upstream 104301 66238098 ~ 66242696 (-) True ppp1r11
TU1802697 other upstream 167618 66301415 ~ 66305176 (-) True G1575541
TU1802943 other upstream 669627 66803424 ~ 66810064 (-) False LOC110496725
TU1802944 other upstream 669627 66803424 ~ 66810466 (-) True LOC110496725

Expression Profile