RNA id: TU1802693


Basic Information

Item Value
RNA id TU1802693
length 2296
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G1575537
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66270190 ~ 66272754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attatcttggcaaaggagaaatgctcactaacagggatgtaaacaagtttgtgcacaaaattgtagagaaataagctttctgtactgtacatatggaaaatttcagggatattttatttcagctcatgaaaccaacacttttaCATGtcgcatacattttttttgtgttctgtgtaatatttgactaaaacaatcatgTCAAAcctttgcttacatttgtatacgataacatatatctctctattatatgtgggaatactttggaacacatttctaaaattaaaataacttggagatgattttctggtgttttataggcttttatgtaaaaaaaaaaaaaaaaaagtaaaacacTTTTGCTTGGAACCTGGGGGGCCCAAAAAAATCACCTGCGGGCCAAATTCGGCTGGGGAACCCTGGGATAGAGTATGCTgtttttatgATGACAGACAAGTGGTATTATTTGAATAATGTATTATTTTACATTCATGCCTATATGGCTTGACTCCAAGCAAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTGGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTATTCCAGGGCCTGCAGTTCTTGGTGTTCAATGGCAGAAAACCTGGTAGTCCACGATTGATATAATCAATGTCCGATCCAGAGTTGAATCCCTGCAGACAGACACTGTAGACAGTCAAGTTGTCCATGTAGAGGGAGGTCCCCTCTCACTGTGATTgtgtttcaaatggcaccctattccctacgttgtgcactactttagaccagggtcctattccTCACAGTGATCATCACTAGTTAACCCCGCCTAGTTCTAAAATGTCTCttcttaaaatcagattttaaacctaaccacactgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802698 lncRNA downstream 41054 66228937 ~ 66229136 (-) True G1575542
TU1802545 lncRNA downstream 87977 66180396 ~ 66182213 (-) False LOC110496716
TU1802544 lncRNA downstream 87977 66180504 ~ 66182213 (-) False LOC110496716
TU1802543 lncRNA downstream 87977 66181113 ~ 66182213 (-) True LOC110496716
TU1802546 lncRNA downstream 89148 66180504 ~ 66181042 (-) False LOC110496716
TU1802721 lncRNA upstream 25493 66298247 ~ 66298722 (-) True G1575561
TU1802725 lncRNA upstream 47544 66320298 ~ 66320565 (-) True G1575565
TU1802730 lncRNA upstream 53989 66326743 ~ 66327020 (-) True G1575570
TU1802726 lncRNA upstream 54558 66327312 ~ 66328021 (-) True G1575566
TU1802753 lncRNA upstream 76540 66349294 ~ 66353229 (-) False G1575578
XM_036953569.1 mRNA downstream 27465 66240524 ~ 66242725 (-) False ppp1r11
XM_036953559.1 mRNA downstream 54983 66180577 ~ 66215207 (-) False LOC110496716
XM_036953560.1 mRNA downstream 90599 66170696 ~ 66179591 (-) True LOC110496892
XM_036953561.1 mRNA downstream 90666 66170696 ~ 66179524 (-) False LOC110496892
XM_036953565.1 mRNA downstream 102519 66139819 ~ 66167671 (-) False LOC110496715
XM_036953570.1 mRNA upstream 21359 66294113 ~ 66313899 (-) True ddx39b
XM_021572765.2 mRNA upstream 420584 66693338 ~ 66696327 (-) True LOC110496727
XM_036953579.1 mRNA upstream 475428 66748182 ~ 66775080 (-) False LOC110496726
XM_036953580.1 mRNA upstream 475428 66748182 ~ 66775081 (-) True LOC110496726
LOC110496895 mRNA upstream 514294 66787048 ~ 66788994 (-) True LOC110496895
TU1802672 other downstream 27494 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 27494 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 213951 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 216455 66014469 ~ 66053735 (-) True G1575457
TU1802374 other downstream 471515 65797630 ~ 65798675 (-) True G1575282
TU1802697 other upstream 28661 66301415 ~ 66305176 (-) True G1575541
TU1802943 other upstream 530670 66803424 ~ 66810064 (-) False LOC110496725
TU1802944 other upstream 530670 66803424 ~ 66810466 (-) True LOC110496725
TU1802980 other upstream 553828 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 597137 66869891 ~ 66870199 (-) True LOC118941007

Expression Profile