RNA id: TU1802753


Basic Information

Item Value
RNA id TU1802753
length 3646
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1575578
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66349294 ~ 66353229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTAAATCAAAGTTTAATAGTTGCAACAGCATCATTCCATAAATTAACATATACATGATTAATAAGTTAACATTCATATCATCAGTATTATTAAAACATCCACTACATTTTAAAATGCCATCatattcccctatatagtgcacttcttttgacgaGGGcgcataagtagtgcactacgtagggaatataCTACTGCTGTATTTGGGATGCAATTCCATTTACGTGAACAAATAAATCACGGTGTCAAGTGGAGCAGGCAAATGAGAAGATCTTCCACTAATACTTcacacaccctattccctacatagtgcactactttagaccagggtcctatgggccctagtgcactatatagggaatagggtgccattcgggtgTGACCCACAAACTGATCCCAAGTCAGCAAATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATCGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATCGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGTGATATTGACCAGGTTAAGAGGAGGGAACAGCCAGGTAACGAGGGTGAACGACGGATGGCGAAGGGGTAAGAAGTGTAAAAAGGGAAAAACAAAACTCCACAAGTAATCATGTGCAAATCCACTTTAAAATATTCAAATCAATGGCACTGGTTTAACATGAACAAAACATTAAAGTACATTAACAGTAAATACCATatcttccttccctctctacctccctccctccctccctccctccctctctacctccctccctctctacctccctccctccctctctctctctctctccctctctaactctttctctgtgtctctctagtgTAGTGATTTAGTGTCCGTGTCTGGTGAGATCAATAAAATCAAGGTAAGGTACCCGTCAACAGGTACAAAATGAACAAGAGAAGAAACTGGTTCAAAAATAACCCCAGGAAGTGAAAACCCCGATACAAAAACAACGTAGCCACCTACTACACCCAGGCGTTGCACTACAACACAATTTAGTGGCGTTATGAGTAGGTGAAATGCAGGTACATTTGTCAACAATGTTAACTATGGTAAAGTATTTAAATCTAAAACAATGAAAACTTCACAAAAAATTGTCTCACTATTAAAAAGGAAGACAGTTAAGATATTAAATAATTAATGGTTAGAATTGGGATTCCCTGATTACAAAAAATATCATCAAAGACATTAAAGGGGCATTACACTCTCAgaatatgtaaaaaataaaaattagggTGGTTCACAGGCACTTAAAATACATTTGAGTAAAATTAAAAATCTTATTTTTGATGTtcctcaaaacaaaaacaaaaaagtttACGCAATACTAAAAATTAGTTAATTAGAACCATTTCCCATCATGCAGTGTAACATCTTGTATGAGTCCTAAATgtccccctattccctatatagtgcactatttttcaccagaacccaaaaatgtgcccttgtcaaaagtagtgcattacatatggaatagggtcccattttggACACACGTTCTTGTGTCAGATCAGGATAGCAGACAAATGTTTTTCTTCACGACAGAAAGCAGGGAGGATTGTGAAAGGTCAGAGAAGTGTTAGGTCAATGTGAGTGACAGAGACAGTCTCTACAGTCTGATGTCTGAGGGAGTGGTTGGCCCTCGAGGTGCTGGGAACATTTCCAGAACATTCTACTGGGGGTAAAAACACAAAACAGGTCTAATAACtaaattaaaatgttttaaaaacctatttttactcaagagggagagagagagaacacctttGGTTCATTCCAAGGACGAGCGGAAACCGAATTCTGTGGTAATTCAATCAATTTGGGGAAAAAAGCACAAAGGGCTTTTTTAAGGGACTAATGTCAATATCGATATTGATAatcttttattttacctttatttaactagacaagtcagttaagaacaaattcttattttcattgacggcctaggaatggtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctccggttactagtccaactctctaaccactaggctaccctgccgccccaaaagtagtgcattaaataTGGAAATAAACTTTGTTGCTTAAAACGTTCAGCTGTGTGTGAAACTGTAAGTAAAGTTATGAGTATGTTATCTATTGTCTCTGTATTTACACACAGTACTGTGTTAAGACTAGCTTTACCTCAGGTCACTGATATCTTACTGGTGTTGAACAATAGACGGATTAGAGTCCCACAAGGACCTAGTGAATCGCCTGACAccacttcttctctctctgtgtgcatgaCGTACCAGCCACCCTCCACTTCCCTGGTACTCCCCTCTGCAGTGTCACAGTGATGCAGGGTTGTGTGCCAAattgcaacctattccctataggccccggtcaaaagtagtgcactatgtagggaatagggttctatttgggactcATTGTCAGTGTTCTACATTTCAATCCCTCAAACAGAATTTCCACAATCGCCATCTGTATTCTTTGCTCTCTCTTGATTTTCATTCCTTTATCTGATCATTCATCACACAGTGCCTTCTATTCTGGTCTCACAAACTCACGCTTCTGTGGTGCTGCTTGACAAagctctcctgtctccctctcgtCCCCCTCACCACCTCCAATCTATCCTGCCTTGGAGCAGGGATGTCCACCTCCCTCAcaactctctcctctgcccttgGGTTCCTATCTCTGTTCTCAGCCATCAGGGACCGGTGCCTCTCCCAGTCCTCTCCCATCAGGCTGCTCACGTCACTCAGGTCCCCCAGGTGCCCCACCGAGTCGCACTTCTCCAGGTCCGAGGCGATGGTCTGGAGGCTGATGACAGACATGGAGTCTgaccctgcctcccccctctccctgtgaccccagccctgctctctgtgtctctccaccCACTGCCTGGTCTTCTCTCCATCAGCCCAGTCCTTctcctccaaccctcctcctccgccACATGCTCCTCCAACCTGAACCCCGACCGCAGCTTTGACCTCAGCCTCCGCCCCCACTGGGGAGCTCCGCCCACCGCAGGCTACGGGGCGGGCCCTGGTGGCTCGGACACGCCCCCTCTGGGCATGGATCTGCTCGCTGATTTGCTCAAGGTTGCGCAGGGCGACGGAGTAGCGCATTTTTACTCTTGCAACGCGTTCTTCCAGCTGCACCACCTTTGCCTTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802726 lncRNA downstream 21273 66327312 ~ 66328021 (-) True G1575566
TU1802730 lncRNA downstream 22274 66326743 ~ 66327020 (-) True G1575570
TU1802725 lncRNA downstream 28729 66320298 ~ 66320565 (-) True G1575565
TU1802721 lncRNA downstream 50572 66298247 ~ 66298722 (-) True G1575561
TU1802693 lncRNA downstream 76540 66270190 ~ 66272754 (-) True G1575537
TU1802773 lncRNA upstream 68592 66421821 ~ 66422788 (-) True G1575597
TU1802777 lncRNA upstream 76653 66429882 ~ 66430874 (-) True G1575601
TU1802782 lncRNA upstream 100592 66453821 ~ 66454139 (-) True G1575606
TU1802784 lncRNA upstream 118760 66471989 ~ 66472274 (-) True G1575608
TU1802785 lncRNA upstream 119063 66472292 ~ 66472791 (-) True G1575609
XM_036953570.1 mRNA downstream 35395 66294113 ~ 66313899 (-) True ddx39b
XM_036953569.1 mRNA downstream 106569 66240524 ~ 66242725 (-) False ppp1r11
XM_036953559.1 mRNA downstream 134087 66180577 ~ 66215207 (-) False LOC110496716
XM_036953560.1 mRNA downstream 169703 66170696 ~ 66179591 (-) True LOC110496892
XM_036953561.1 mRNA downstream 169770 66170696 ~ 66179524 (-) False LOC110496892
XM_021572765.2 mRNA upstream 340109 66693338 ~ 66696327 (-) True LOC110496727
XM_036953579.1 mRNA upstream 394953 66748182 ~ 66775080 (-) False LOC110496726
XM_036953580.1 mRNA upstream 394953 66748182 ~ 66775081 (-) True LOC110496726
LOC110496895 mRNA upstream 433819 66787048 ~ 66788994 (-) True LOC110496895
XM_021572762.2 mRNA upstream 449641 66802870 ~ 66810173 (-) False LOC110496725
TU1802697 other downstream 44118 66301415 ~ 66305176 (-) True G1575541
TU1802672 other downstream 106598 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 106598 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 293055 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 295559 66014469 ~ 66053735 (-) True G1575457
TU1802943 other upstream 450195 66803424 ~ 66810064 (-) False LOC110496725
TU1802944 other upstream 450195 66803424 ~ 66810466 (-) True LOC110496725
TU1802980 other upstream 473353 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 516662 66869891 ~ 66870199 (-) True LOC118941007
TU1803115 other upstream 704948 67058177 ~ 67058673 (-) True LOC118941008

Expression Profile