RNA id: TU1802893


Basic Information

Item Value
RNA id TU1802893
length 3711
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1575705
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66685211 ~ 66688975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACACAGGAATACCATATGCGTACGTATGTATGAGCAAGATAATACATATATCATAATAATCATTTTACACAATGTCAATATTGTGCATATCCTCGTTTTGTATACACATCACTGGCATCATTGTTGTATTCCGACTACACAGAGCTCGCTATACattatacatattatacattacatacagaatactgaCAAACACATGCACAGATGTGCACCGTAAAGGATCTGACACGAGGACTGCGTGGTACAAGGTTCTCGTTATAATGCGTACATTGGAGCTTCGTAAGCACTACTCAAGACATTCAGAATTGCTTTACGACACGACAACTCATATCACAGTCATTAACAAGCTGGGCTACTGTACCACACTAGAGTCTAGAGAGTTCCAAAGGTCAAGCAAGGCCATGGCATTCTGGGGCCTTGAGAAAGGTTGAAGGTCACACAAGCACTAACCCATTTGCCATAAGAGTTGATGAATACGGAAGAGGTGCTCATGAGGGTACACTCCATGTTACATTACGTGGGTCGTGGGTTGTGGGTCAGGGAGGTGGGTCGTGGGTTGTGGGTTAGGGGCGTGGGTCGTTAAAAGTCCAAGGGCTTCATTCAACCTGTAGCGCGGATGAGCTACTTTGTAGCGCGGAAGAGATGTAAAGATGATTTCTGAATGAGCAGACAGAtacagcgtttaccgtgaattcAGTCACCACAAACGCAGAAACATTTCCATTAAATGTCAATCACGCTATAACGCTGATCTTATCAACCCCTGATTGAATCAAAGCCCCAAAATGAAAAATCGGGATAAAAAGATTAGCTTAATAAAAGAGTAGAGGTCACAGAACTGAAAGGTACTGAGCTGGTCCAGAGAGGGAGATGTGCCCCAGACCTGTCTAAATCAACATCCTCCCTACGGGTAGAGGTTACAGAACTGACTCCAGACCTGTCTAAATCAACATCCTCCCGACGGGTAGAGGTTACAGAACTGACTCCAGACCTGTCTAAATCAACATCctccatacaggtagaggttACAGAACTGACTCCAGACCTGTCTAAATCAACATCCTCCCTACGGGTAGAGGTTACAGAACTGACTCCAGACCTGTCTAAATCAACATCCTCCCTACAGGTAGAGGTTACAGAACTGACTCCAGACCTGTCTAAATCAACATCCTCCCGACGGGTAGAGGTTACAGAACTGACTCCAGACCTGTCTAAATCAACATCCTTCCTACAGGTAGAGGTTACAGAACTAACTCCAGACCTGTCTAAATCAACATCCTTCCTACAGGTAGAGGTTACAGAACTGACTCCACACTTGTCTAAATCAACATCCTCCCTACGGGTAGAGGTTACAGAACTGACTCCAGACCAGTCTAATTCAACATCCTCCCTAGAGGTTACAGAACTGCATAGGGGGCCATTTCAGCTATTGCATTTCTCAACATCACAAAGCTGATCATCTGACAGAGGCGGGGTACTCTGGAATTATGTTAAGTATCCGAGGAAGGGgtattttctgtctgtctctaaaaAGTACAgcgcttttaaaaaaaaaaagtccttCCTCCTTGACATTGCTTCACAAGGCAAACATGAAACCGTGGAGCAGAAGCAACCGACAAAACAGGGAATTACTGCTGAATGGAGGGGAGATTCTTTTTTACAGCCACGTGTTTGTTTGAGTAGTTTACAATTTGCTAAAGAGGAGAGCCTCCCCCTCTTAAAGTGTCACTGAGGAATCAACTGGATCTTCAGATGGGGTGATTCAACTTTGTCCCAAAATAGCAGAAACCCTATGTAGTGTACTTGAGCAACAATGGACCCTGGtgcacactacatagggaatagtgcacactatgtagggaatagtgcacactacatagggaatagtgcacactacatagggaatagggtaccatttgggatgcatgcaaCCTAAAGCTTTTAGCCGGCGAGAAGGTGagataaaattttaaaaaagatGAATGATAATAATCCAAAATCAATGACAAATGTGTGTATGAGCTTGTGAGGCTTGTGCACTATGACAAGTACTACTTCCTCCGACTTCTAACTAAACGGTTCAGAGCCCAAACTTCATGTTCAGAAGAGCTATAAAAGTATGATTCCGTTTCACCGTTGGTTGTATTATACTGTAACTCACTCATCCTATTATGTGTTTGACCTGTTTTATAGAGTTGTAAAACTCCCAGGTTTTCCACCAATCACACGGGTGTGTTTTCTGACATATTTCTTTCTGATTCCTcgggaatcttccaaccagggTTTGTGGAAAACCTGGGAATCTTGGGGAAAGTTAGCAGATTTGTACGACCCTAACTAACCTGTTATCTTCAGCTATATTCCCATTCGGCTTGTATTTTGGACAACACTTTCTGTCTGCCTTATCTGCTTAGAAGTCTCTTCCGGGCAAACAGCTGTGGACTGGCATTACCACCACTGTTTCAGTGTTGATCAGCTTTATGAAATAAAGGCACTACTTCCCTTTACTGCAATCAGGACAACTTAACTACTTTATAGCGGAGGCCTGAACCTACTGTAACACTGCATCTGCATTGAACCTACTGTAACACTGCATCTGCATTGAACCTACTGTAACACAGCTTCTGCCACCCAGAAACAGATTATTCTGCAGCTGGAATACATCCCAATAATCAGCACACAccaggtagatagatagatagagagagagagagagagagagagagagagagagagagagagagatagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagcgcgagagagagagagagagacagagagagagacagagagagagagagagagagatagagagagagagagagagagagatagagagatagagagagagagagagagatagagagagagagagagcgagagagagagagcgagagagagaaggagagagagacagagagagagaaagagagagacagagagagagagagagagagagagagagagagagagagagatagagagagatagagatagagagagagagagagagagagagacagagagagacagagagatagatagagagagagagagacatagcgagacagagagagagagagagagagagatagagagatagatagagagagagagagagagagagagagagagagagagacagagagcgagagagagagagagagacagagagagacagagagatagatagagatagagagagagagagagagagagagagagagatagagagatagagagatagagagagagagagagacagagagcgagcgagagagagagagagacagagagagagagaaagagagagacagagagagagagagagagagagagagagagagagagatatatatatagagagagagagagagagagagatagagagagagagagagaccctggcatgagggtctgctatacaaactgatggaaagtggtgttgggtggtgttgggggtaaaacatacgacattataaaatccatgtacacaaacaacaagtgtgcggttaaaattggcaaaaaacacacacatttcttcacacagggtcgtggggttagacagggatgcagtttaagccccaccctcttcaacatatatatcaacgaattggcgcgggcactagaaaagtctgcagcacccggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802890 lncRNA downstream 1516 66682916 ~ 66683695 (-) True G1575704
TU1802846 lncRNA downstream 82141 66601914 ~ 66603070 (-) True G1575664
TU1802830 lncRNA downstream 126052 66558557 ~ 66559159 (-) False G1575651
TU1802829 lncRNA downstream 126114 66558557 ~ 66559097 (-) False G1575651
TU1802894 lncRNA upstream 2164 66691139 ~ 66691466 (-) True G1575706
TU1802895 lncRNA upstream 2616 66691591 ~ 66691945 (-) True G1575707
TU1802896 lncRNA upstream 2977 66691952 ~ 66692361 (-) True G1575708
TU1802900 lncRNA upstream 9098 66698073 ~ 66698297 (-) True G1575711
TU1802913 lncRNA upstream 24626 66713601 ~ 66714052 (-) True G1575721
XM_036953570.1 mRNA downstream 371312 66294113 ~ 66313899 (-) True ddx39b
XM_036953569.1 mRNA downstream 442486 66240524 ~ 66242725 (-) False ppp1r11
XM_036953559.1 mRNA downstream 470004 66180577 ~ 66215207 (-) False LOC110496716
XM_036953560.1 mRNA downstream 505620 66170696 ~ 66179591 (-) True LOC110496892
XM_036953561.1 mRNA downstream 505687 66170696 ~ 66179524 (-) False LOC110496892
XM_021572765.2 mRNA upstream 4363 66693338 ~ 66696327 (-) True LOC110496727
XM_036953579.1 mRNA upstream 59207 66748182 ~ 66775080 (-) False LOC110496726
XM_036953580.1 mRNA upstream 59207 66748182 ~ 66775081 (-) True LOC110496726
LOC110496895 mRNA upstream 98073 66787048 ~ 66788994 (-) True LOC110496895
XM_021572762.2 mRNA upstream 113895 66802870 ~ 66810173 (-) False LOC110496725
TU1802697 other downstream 380035 66301415 ~ 66305176 (-) True G1575541
TU1802672 other downstream 442515 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 442515 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 628972 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 631476 66014469 ~ 66053735 (-) True G1575457
TU1802943 other upstream 114449 66803424 ~ 66810064 (-) False LOC110496725
TU1802944 other upstream 114449 66803424 ~ 66810466 (-) True LOC110496725
TU1802980 other upstream 137607 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 180916 66869891 ~ 66870199 (-) True LOC118941007
TU1803115 other upstream 369202 67058177 ~ 67058673 (-) True LOC118941008

Expression Profile