RNA id: TU1802931



Basic Information


Item Value
RNA id TU1802931
length 1778
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1575736
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66742104 ~ 66743908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccctattccctatatagtgcactactttagaccatggcctggtctaaagtagtgcactaaatagggaatatacTCAAAAAGGCCCATAGTGTTCTggtctcagagcctggttcctctctaggtttcttcctaggttttggccttcctagggagtttttcctagccactgtgcttccacaactgcattgcttgctgtttcgggttttaggctgggtttctgtacagcactttgtgacatcagctgatgtaaagaagggctttataaatacatttgattggttgattgagtgattggtctaaagtagtgccctatagcaaacagggtgccatttgggagacgtACATAGTCCTTTGTGGTGTGTTGTTACGGTGTACTACACATGTCCCATAGCCAATCAGATCTGGTTACCTGGCAGTTTGAAGGTGTTCTGCTGGGTCTCCAACAACAGCCCAAAGCCCCGGGTGTTGATGTAGCGACTGTAGAGGTTTCCCCTGGCAACTAGGCCCTGTTGGCTACCACGGTGATGGAGCAGGGAAGGTAGAGAGGATAGGAAGAGCAAGGGAATGGGAGATGGAGGACAAATAAGAGCAGGacagagaaaacaagagagagtgcaagaaagaggaagaaagagggagggaaacatGAATAGGGAGCGAAGGAGGAGACAAGACAAGAAGACAAGTGTGTGCAAAAGGAAAAAAGTGAAGTAAACAGCAAGAGAATTCAACAGAAAGGAAACAGCAAGAGAATTCAACAGAAGAGAAACACTTAATTAAAACAGAATTAGCAAACAATGGCAAAACTGAATGCTTGACAAATCGTACAAACAATAActgaaaacaaaaaaacaaacatattatTGTGATATGAAGTGAAAGCAACGCCAACAGAAAGACCCGAAGACTAATGTGAGAATTATACAAGTAGGGCAGGGGTTACCAAAGTTTTTCCTAAGATGACAGATTTTCTCAGGGGACTCCATTTAAAATTTCAGGGGAACCCACATGGGGTCCCAACCCCAAGTTTAAGAACCACTGAAGTAGGGGCCTATTAATGAAAAAGCCTTCTCTGGCTCATTATCAAATTCTAAGCATTGTTTCTTGTTGATGTGtcatgttgttatttatttattttatttcacctttatttaaccaggtaggcaagttgagaacacctttatttaaccagggaggcaagttgagaacaagttctcatttacaattgtgacctggaccaagataaagcaaagcagtgcgacacatacaacgacacagagttagtacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcaaagtagcgatagaaataatggggtgcaaaggagcaaaataaataaataaatacagtagggaaagaggtagttgtttgggctaaattaatgtacaggtgcagtaatctgttatgacaaagtgaaaagttttttttattttttaaacattattGGCGAACTTCATGTTAATAAACATGAATGAATATGCCTCCAAAAGTTATCCAAATATTATTTTAGTGGCCTCATACACTTAACGAGATTACCTATGAAATAACATTGTAACTTAACGAGAGTACCTACGAAAGAACATTCTAACTTAACGAGAGTACCTATGAAATAACATTCTAACTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1802927 lncRNA downstream 4488 66736648 ~ 66737616 (-) True G1575732
TU1802913 lncRNA downstream 28052 66713601 ~ 66714052 (-) True G1575721
TU1802900 lncRNA downstream 43807 66698073 ~ 66698297 (-) True G1575711
TU1802896 lncRNA downstream 49743 66691952 ~ 66692361 (-) True G1575708
TU1802895 lncRNA downstream 50159 66691591 ~ 66691945 (-) True G1575707
TU1802932 lncRNA upstream 2541 66746449 ~ 66746662 (-) True G1575737
TU1802934 lncRNA upstream 8787 66752695 ~ 66753483 (-) False G1575739
TU1802935 lncRNA upstream 8787 66752695 ~ 66755442 (-) False G1575739
TU1802936 lncRNA upstream 8787 66752695 ~ 66755442 (-) True G1575739
TU1802963 lncRNA upstream 46201 66790109 ~ 66791051 (-) True G1575762
XM_021572765.2 mRNA downstream 45777 66693338 ~ 66696327 (-) True LOC110496727
XM_036953570.1 mRNA downstream 428205 66294113 ~ 66313899 (-) True ddx39b
XM_036953569.1 mRNA downstream 499379 66240524 ~ 66242725 (-) False ppp1r11
XM_036953559.1 mRNA downstream 526897 66180577 ~ 66215207 (-) False LOC110496716
XM_036953560.1 mRNA downstream 562513 66170696 ~ 66179591 (-) True LOC110496892
XM_036953579.1 mRNA upstream 4274 66748182 ~ 66775080 (-) False LOC110496726
XM_036953580.1 mRNA upstream 4274 66748182 ~ 66775081 (-) True LOC110496726
LOC110496895 mRNA upstream 43140 66787048 ~ 66788994 (-) True LOC110496895
XM_021572762.2 mRNA upstream 58962 66802870 ~ 66810173 (-) False LOC110496725
XM_021572763.2 mRNA upstream 58962 66802870 ~ 66810492 (-) False LOC110496725
TU1802697 other downstream 436928 66301415 ~ 66305176 (-) True G1575541
TU1802672 other downstream 499408 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 499408 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 685865 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 688369 66014469 ~ 66053735 (-) True G1575457
TU1802943 other upstream 59516 66803424 ~ 66810064 (-) False LOC110496725
TU1802944 other upstream 59516 66803424 ~ 66810466 (-) True LOC110496725
TU1802980 other upstream 82674 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 125983 66869891 ~ 66870199 (-) True LOC118941007
TU1803115 other upstream 314269 67058177 ~ 67058673 (-) True LOC118941008

Expression Profile