RNA id: TU1803516


Basic Information

Item Value
RNA id TU1803516
length 2876
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G1576222
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67401448 ~ 67441976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagcaacaACAAGGCTACCAATTGTTTCTTACACATTCCTCTATTTTCCTCCACAGTTTATTTCCCTTCTGTTTCTCGTCAGTTCTCTTCCTCTCCGGCTTTTCCACGTCAACACTATTCTCTTTGAGAAAACTAGAGCAatatgagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagggagagagagagagaaagagagagagagaaagagagagagagagagagacctaattCAACAGCGGCATCTATGCATTATGACTTGAAACAGCCACACTATATCCAGTGTACAGCTATTATACAGAGAAACAGCATCTGACCCAGGACAGCTATCCAGCCAGCCAATCACAcccacaaccacacaaacacacacacatacacaaatacaccaacacacacacacacacacacacacacaaactttgtTTACTTAAATCACTTATCTGTGAGTGATTGTCAGTTTAAGCCCTGCATGGGGATACACAGACAACCTTTCTGTCATCCTCACACCTTCCTGAAATCCCTTTGACAGTAAAACCTTCACTGAATGACAGCttgtttcattttttttcatttttttctccaCAGTCTAGAATAGTGTGTTCAATTCTAATGCAGTGTTTGGACTGCTTGTGAAGGAGTCTCATTAAGAGGTGAATCCTCATTTATACACATTTTCACCGAGTCTCCTGTTGACATCAATATGAAGTGAAAATGTAGCACTAACAGGTAGTTAGGATTGACCCTTTAGTCAGGAAGGAGTGTAGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGATTGGCCCTTTAGTCAGGAAGGAGTGTAGGGATTGGCCCTTTAGTGAGGAAGGAGTGTAGGGGTTGCTTCTTTAGTCAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTCAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTGAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTCAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTCAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTCAGGAAGGAGTGTAGGGGTTCCTTCTTTAGTGAGGAAGGAGtgtccctccttcccctctgcaTTCTCTGTCTACTTCATTATACTGTAGGCGTGTTGatttgacagacacacacacacacacacacacagttgtgttGCTCTAAGCTAAACTCAAACAGGTATATGTGACAGCAGCCAGGTCtgataagtctctctctctctctctctctctctctctctctctctcccccctctctgtctctctctctctccccccctctctcccccccctctatctcccccctctctgtctctctctctccccctctctgtctctctcctctctccccctctctctctccctcgctccctctctctccccctctccctctatcacacacatacagtacactactgagacagagagacagagagagtgagaaattagacccaaccaaatcacaagaaaacaaaaagataattacttaacacattggaaagaatcaacaaaaaaacagagagtacacattggcagaatacctgaccactgtgactgacccaaacttaaggaaagctttgactatgtacagactcagtgagcatagccttgctattgagaaaagccaccgtaggcagacatggctctcaagagaagacaggctatgtgctcactgccgacaaaatgaggtggaaattgagctgcacttcctaacctcctgccaaatgtatgaccatattagagagacatatttccctcagattacacagatccacaaagaatttgaaaacaaacccaattttgatgaactcccatatctactgggtgaaatagcacagtgtgccatcacagcagcaagatttgtgacctgttgccacaagaaaagggcaaccagtgaagaacaaacaccattgtaaatacaacccatatttatcttaattttcccttttgtactttaactatttgcatattattacaacactgtataaagacataatatgacatttggaatgtctttattcttttggaacttctgtgagtgtaatgtttactgttaatttttattgtttatttcacttttgtttattatctacttcacttgttttggccagagagagagagacagagaaagagagagagagagagacagagcgagacagagacagacagagaaagagagagagagagacagagcgagacagagacagacagagaaagagagagacagagagagacagagacagacatagtcagagagagagacagagacagagagagagccttaACCCATATACTACCAGATTATACTGTACCTATCTATTTACAGGACTATAGATGGGCGTGTGTCTAATGATTCACTAAAATAACCCTATATATAAACACGCAAGATATTGCTATATTTACTTATATATTTGTACAACAGTAAACAAATAACCAAgctagcatcccaaatggctccctgttcCCTGTATAATATAGTACTCCCATGGGGAAGCATGGATTCTATCGACACATGGAGCTCCGGGTTTTATGTGTAACCAAGTCTGTGTTAAAGCATTTTGATGTTCATAACTGGAAACTTTAATGAGGGCTAGCATGACGTTATACTATTTCTATGAAAGTAATATACATGTACATCAAATAAAATGTCTAATTATGTATTCAAACGACAAGACAATAATAAATATCTGATATTTTCAATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803566 lncRNA downstream 14838 67384143 ~ 67386610 (-) True G1576260
TU1803552 lncRNA downstream 49670 67351147 ~ 67351778 (-) True G1576247
TU1803551 lncRNA downstream 49864 67351147 ~ 67351584 (-) False G1576247
TU1803537 lncRNA downstream 79255 67321788 ~ 67322193 (-) True G1576234
TU1803527 lncRNA downstream 88319 67312193 ~ 67313129 (-) True G1576226
TU1803572 lncRNA upstream 6642 67411449 ~ 67412631 (-) True G1576266
TU1803595 lncRNA upstream 70652 67475459 ~ 67475901 (-) False G1576288
TU1803596 lncRNA upstream 70652 67475459 ~ 67476466 (-) False G1576288
TU1803597 lncRNA upstream 70652 67475459 ~ 67476466 (-) True G1576288
TU1803600 lncRNA upstream 75190 67479997 ~ 67480440 (-) True G1576290
XM_021572767.2 mRNA downstream 52464 67341388 ~ 67348984 (-) True srfbp1
XM_036953582.1 mRNA downstream 64252 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA downstream 64252 67325870 ~ 67337196 (-) True LOC110496729
XM_021572761.2 mRNA downstream 288865 67108578 ~ 67112583 (-) False sox4a
XM_036951080.1 mRNA downstream 342899 67058124 ~ 67058549 (-) False LOC118941008
XM_036953587.1 mRNA upstream 2505 67407312 ~ 67441367 (-) True fndc5b
XM_036951081.1 mRNA upstream 138754 67543561 ~ 67558111 (-) True LOC118941009
XM_021572773.2 mRNA upstream 257318 67662125 ~ 67668116 (-) True eif3i
XM_036953589.1 mRNA upstream 265281 67670088 ~ 67684247 (-) False txlna
XM_036953590.1 mRNA upstream 265281 67670088 ~ 67684423 (-) True txlna
TU1803205 other downstream 197961 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 342775 67058177 ~ 67058673 (-) True LOC118941008
TU1803003 other downstream 531249 66869891 ~ 66870199 (-) True LOC118941007
TU1802980 other downstream 574571 66826582 ~ 66826877 (-) True G1575774
TU1802944 other downstream 590982 66803424 ~ 66810466 (-) True LOC110496725
TU1803844 other upstream 510381 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 1217441 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1343805 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1908079 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1908079 69312886 ~ 69315007 (-) False G1577996

Expression Profile